Detailed information of deep learning profile BP000356.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000356.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR724YTA
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.19 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.10 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.06 0.19 0.13 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3800 5037 6140 4622 3792 4253 3865 4105 4521 4672 4761 4850 4218 2971 4378 4961 2199 919 11573 1609 3301 14604 402 7246 1431 386 515 2944 7649 1794 2787 6630 3327 5377 4173 4723 4235 4142 4872 5857 4017 4804 4974 5348 4904 4873 4833 4848 4903 4640 ]
C [ 4910 5686 4199 3964 3618 4771 6955 6229 5734 5226 4956 4589 4958 6131 4181 2473 13554 17515 1279 9777 6754 645 115 238 852 120 919 13655 1153 9420 6224 4548 4023 3824 3529 5081 6223 6963 5920 3996 5165 4566 4490 4362 4583 4641 4846 4814 4737 4889 ]
G [ 5900 3886 4567 4620 4467 4525 3491 3840 4365 4633 4521 4136 4831 3262 5993 8111 1754 360 3246 6848 1803 2156 18290 11300 10496 18260 15989 840 9156 5730 2182 5635 4947 4143 7834 5169 4735 3112 3373 5139 5199 5218 5016 4478 4453 5148 5144 5049 4997 5092 ]
T [ 4440 4441 4144 5844 7173 5501 4739 4876 4430 4519 4812 5475 5043 6686 4498 3505 1543 256 2952 816 7192 1645 243 266 6271 284 1627 1611 1092 2106 7857 2237 6753 5706 3514 4077 3857 4833 4885 4058 4669 4462 4570 4862 5110 4388 4227 4339 4413 4429 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.04 -0.02 -0.01 0.09 -0.05 0.06 -0.07 -0.05 -0.06 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.20 -0.01 0.13 0.07 0.01 -0.03 -0.06 0.02 -0.03 -0.02 0.15 -0.01 0.08 0.06 0.04 0.02 0.02 0.01 0.03 ]
G [ 0.02 0.02 0.02 0.03 0.01 0.04 0.07 -0.02 -0.02 0.09 0.06 -0.01 0.03 0.19 0.14 0.11 0.19 0.15 -0.02 0.15 0.06 0.00 0.04 0.03 0.00 0.05 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.08 -0.03 -0.05 0.06 -0.03 -0.04 -0.08 0.03 -0.04 0.01 -0.03 -0.07 -0.01 0.03 -0.05 0.03 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 3126

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 700

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 430

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 320

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 42

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages