Detailed information of deep learning profile BP000355.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000355.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR721AHD
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.14 -0.00 0.05 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.13 0.05 0.04 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4122 3663 3246 5093 6988 4710 3390 4330 3281 3895 4450 4930 4981 4968 4276 2473 4026 5282 1693 465 12480 1036 2913 15679 273 7148 1347 547 875 3114 7230 2234 2828 6566 3471 5548 4104 4645 4484 3959 4800 6080 3936 4680 5095 5429 4994 4771 4877 4912 ]
C [ 4716 3220 4733 6230 3839 3696 2953 4539 8349 6932 6218 5353 4939 4259 4884 6411 4024 1988 14960 18178 915 11210 7573 564 148 290 993 490 1391 12677 1645 8890 6198 4658 3902 3706 3496 5342 6235 7235 6078 3954 5356 4505 4382 4250 4399 4567 4865 4823 ]
G [ 4705 6571 6817 3211 4496 4533 3932 4260 2694 3122 4142 4320 4204 3817 4708 2689 6476 8305 1192 170 3239 6206 1387 1693 18393 11245 10473 17444 14995 1275 8805 5744 2500 5486 5220 4262 7847 5138 4509 3014 3161 5086 4965 5164 4857 4294 4345 5302 5073 4971 ]
T [ 5422 5511 4169 4431 3642 6026 8690 5836 4641 5016 4155 4362 4841 5921 5097 7392 4439 3390 1120 152 2331 513 7092 1029 151 282 6152 484 1704 1899 1285 2097 7439 2255 6372 5449 3518 3840 3737 4757 4926 3845 4708 4616 4631 4992 5227 4325 4150 4259 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.07 -0.04 0.04 -0.04 -0.03 -0.03 -0.00 0.01 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.09 0.14 -0.03 0.09 0.05 0.01 -0.01 -0.04 0.01 -0.03 -0.02 0.09 -0.01 0.04 0.03 0.02 0.01 0.01 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.07 0.04 -0.01 0.02 0.13 0.09 0.07 0.12 0.09 -0.02 0.09 0.03 -0.00 0.02 0.02 -0.00 0.03 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.04 -0.03 -0.03 -0.05 0.01 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages