Detailed information of deep learning profile BP000354.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in prostate gland using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000354.1
Cell line/tissue: prostate gland
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR720USO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 0.00 0.00 0.00 -0.00 -0.00 0.01 0.05 -0.00 0.14 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4218 4036 4138 4664 4593 4401 4314 4415 3920 4606 4544 3737 3846 3413 5305 6120 2381 7182 2096 1180 1813 1572 387 5945 274 141 1352 6539 584 2636 129 1188 3193 4289 6499 4769 5349 4560 4282 4208 4637 4524 5214 7112 5677 3784 4102 4170 4825 5286 ]
C [ 5012 5151 5101 4567 4508 4919 5106 5266 5124 3496 3335 4716 5201 7505 4336 4980 5693 2589 5579 9081 1242 14881 17363 9863 11542 18073 1842 1803 6510 3455 190 1474 8183 5969 2938 4747 3870 4419 4629 4324 3582 3323 4465 4380 4457 4600 3773 5913 6505 4814 ]
G [ 4748 4794 4618 4595 4372 4471 4621 5076 4038 5768 6751 5912 5045 3657 3796 4140 4456 5894 8817 1522 12467 1396 353 1343 346 101 751 7342 10183 1102 17623 14174 2279 4287 6461 5012 4612 4963 5139 5683 6403 7241 4729 3466 3977 4242 5694 4993 3676 4411 ]
T [ 4561 4558 4682 4713 5066 4748 4498 3782 5457 4669 3909 4174 4447 3964 5102 3299 6009 2874 2047 6756 3017 690 436 1388 6377 224 14594 2855 1262 11346 597 1703 4884 3994 2641 4011 4708 4597 4489 4324 3917 3451 4131 3581 4428 5913 4970 3463 3533 4028 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.02 -0.01 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.01 0.02 -0.01 0.03 0.09 -0.03 0.09 0.13 0.08 0.10 0.14 0.02 -0.02 0.04 0.06 -0.03 -0.02 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.02 -0.04 -0.00 -0.05 -0.02 -0.00 0.04 0.09 -0.02 0.15 0.10 -0.02 0.02 0.04 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.07 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2711

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 917

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 726

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 376

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages