Detailed information of deep learning profile BP000353.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000353.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR718SDR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.06 -0.00 0.13 0.19 0.06 0.07 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.01 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4588 4738 4452 4288 4512 5390 5101 4896 4714 4830 4024 5061 5017 3904 4154 3550 5911 7006 2213 8433 2049 1053 1742 1621 263 6687 214 161 1330 7326 723 2777 188 1416 3659 4653 7208 5278 5850 4991 4622 4521 5148 5012 5763 7769 6019 4135 4653 4584 ]
C [ 5212 4941 5240 5254 5390 4460 4476 5100 5353 5326 5199 3240 3031 4764 5255 8205 4234 5038 5700 2060 5785 9567 811 16543 18853 10833 11398 18947 1853 1734 6986 2906 275 1586 8218 6334 3179 4826 4138 4481 4654 4403 3695 3420 4545 4525 4771 4709 3940 6206 ]
G [ 5016 4867 4915 4952 4639 4580 4332 4446 4587 5344 4063 6297 7385 6413 5267 3504 3666 4118 4806 6235 9945 1100 13977 905 99 784 169 83 582 7308 10484 1140 18424 14478 2371 4149 6221 5059 4500 5054 5340 5955 6526 7314 4760 3434 3912 4198 5671 4969 ]
T [ 4741 5011 4950 5063 5016 5127 5648 5115 4903 4057 6271 4959 4124 4476 4881 4298 5746 3395 6838 2829 1778 7837 3027 488 342 1253 7776 366 15792 3189 1364 12734 670 2077 5309 4421 2949 4394 5069 5031 4941 4678 4188 3811 4489 3829 4855 6515 5293 3798 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.05 0.04 -0.02 -0.07 -0.03 0.01 -0.04 0.03 -0.09 -0.04 -0.04 0.07 -0.06 -0.03 -0.09 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.02 0.05 0.00 0.03 0.04 -0.01 0.06 0.16 -0.03 0.15 0.20 0.12 0.15 0.21 0.03 -0.02 0.06 0.10 -0.03 -0.03 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.03 0.03 0.01 0.01 0.02 0.04 0.05 0.08 -0.02 0.16 -0.03 -0.05 0.01 -0.06 -0.02 -0.00 0.07 0.13 -0.03 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.02 -0.03 0.04 -0.03 -0.03 0.03 -0.02 -0.06 -0.06 -0.08 0.06 -0.06 0.10 -0.02 -0.03 0.04 -0.02 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 427

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 373

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 83

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages