Detailed information of deep learning profile BP000353.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000353.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR718SDR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.01 ]
C [ 0.00 0.01 0.01 -0.00 0.10 0.20 -0.00 0.07 0.02 -0.00 -0.00 0.00 -0.00 -0.00 0.00 0.11 -0.00 0.04 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.20 0.07 0.06 0.19 0.13 -0.00 0.06 0.02 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3798 5293 6515 4855 3829 4489 3811 4188 4678 4941 5031 5069 4394 2949 4421 5309 2077 670 12734 1364 3189 15792 366 7776 1253 342 488 3027 7837 1778 2829 6838 3395 5746 4298 4881 4476 4124 4959 6271 4057 4903 5115 5648 5127 5016 5063 4950 5011 4741 ]
C [ 4969 5671 4198 3912 3434 4760 7314 6526 5955 5340 5054 4500 5059 6221 4149 2371 14478 18424 1140 10484 7308 582 83 169 784 99 905 13977 1100 9945 6235 4806 4118 3666 3504 5267 6413 7385 6297 4063 5344 4587 4446 4332 4580 4639 4952 4915 4867 5016 ]
G [ 6206 3940 4709 4771 4525 4545 3420 3695 4403 4654 4481 4138 4826 3179 6334 8218 1586 275 2906 6986 1734 1853 18947 11398 10833 18853 16543 811 9567 5785 2060 5700 5038 4234 8205 5255 4764 3031 3240 5199 5326 5353 5100 4476 4460 5390 5254 5240 4941 5212 ]
T [ 4584 4653 4135 6019 7769 5763 5012 5148 4521 4622 4991 5850 5278 7208 4653 3659 1416 188 2777 723 7326 1330 161 214 6687 263 1621 1742 1053 2049 8433 2213 7006 5911 3550 4154 3904 5017 5061 4024 4830 4714 4896 5101 5390 4512 4288 4452 4738 4588 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.02 0.04 -0.03 -0.02 0.10 -0.06 0.06 -0.08 -0.06 -0.06 -0.02 0.03 -0.03 -0.03 0.04 -0.03 0.02 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.20 -0.03 0.13 0.07 -0.00 -0.02 -0.06 0.01 -0.05 -0.03 0.16 -0.02 0.08 0.05 0.04 0.02 0.01 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.05 0.07 -0.03 -0.03 0.10 0.06 -0.02 0.03 0.21 0.15 0.12 0.20 0.15 -0.03 0.16 0.06 -0.01 0.04 0.03 0.00 0.05 0.02 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.09 -0.03 -0.06 0.07 -0.04 -0.04 -0.09 0.03 -0.04 0.01 -0.03 -0.07 -0.02 0.04 -0.05 0.03 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 427

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 373

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 274

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 157

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 155

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 83

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages