Detailed information of deep learning profile BP000352.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000352.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR715FHW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.01 0.06 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4493 4061 3967 5243 6638 4896 3879 4550 3922 4166 4869 4930 5055 5198 4381 3021 4462 5348 2150 853 12412 1603 3336 15635 316 7364 1461 251 657 3198 7918 2021 2954 6870 3466 5666 4418 4990 4596 4420 5096 6022 4264 5066 5256 5543 5286 5146 5134 5216 ]
C [ 4711 3853 5094 5935 4272 4149 3630 4952 7576 6687 5894 5455 5212 4693 5285 6471 4385 2545 14622 18447 1315 10430 7285 571 78 210 836 53 955 14049 1261 9770 6312 4596 4276 3887 3707 5218 6246 7113 6154 4232 5428 4690 4629 4616 4700 4834 5025 4872 ]
G [ 5035 6499 6266 3991 4733 4711 4544 4644 3445 3849 4508 4822 4485 4126 5001 3242 6283 8352 1613 329 3059 7071 1770 2086 19320 12047 11003 19384 16592 823 9444 5819 2317 5922 5129 4386 8038 5392 4986 3340 3580 5294 5341 5395 5196 4625 4622 5255 5285 5256 ]
T [ 5652 5478 4564 4722 4248 6135 7838 5745 4948 5189 4620 4684 5139 5874 5224 7157 4761 3646 1506 262 3105 787 7500 1599 177 270 6591 203 1687 1821 1268 2281 8308 2503 7020 5952 3728 4291 4063 5018 5061 4343 4858 4740 4810 5107 5283 4656 4447 4547 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.05 -0.06 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.00 ]
C [ 0.03 0.02 0.01 0.03 0.05 0.04 -0.01 0.11 0.16 -0.01 0.12 0.06 0.01 -0.01 -0.04 0.02 -0.02 -0.02 0.12 -0.01 0.06 0.04 0.03 0.02 0.01 0.01 0.02 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.06 -0.01 -0.01 0.08 0.06 -0.01 0.03 0.16 0.12 0.09 0.16 0.12 -0.02 0.12 0.05 0.00 0.03 0.02 0.00 0.04 0.02 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.06 -0.02 -0.05 0.06 -0.02 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1375

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1310

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 612

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 408

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 293

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages