Detailed information of deep learning profile BP000352.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000352.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR715FHW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.16 0.05 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.01 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4547 4447 4656 5283 5107 4810 4740 4858 4343 5061 5018 4063 4291 3728 5952 7020 2503 8308 2281 1268 1821 1687 203 6591 270 177 1599 7500 787 3105 262 1506 3646 4761 7157 5224 5874 5139 4684 4620 5189 4948 5745 7838 6135 4248 4722 4564 5478 5652 ]
C [ 5256 5285 5255 4622 4625 5196 5395 5341 5294 3580 3340 4986 5392 8038 4386 5129 5922 2317 5819 9444 823 16592 19384 11003 12047 19320 2086 1770 7071 3059 329 1613 8352 6283 3242 5001 4126 4485 4822 4508 3849 3445 4644 4544 4711 4733 3991 6266 6499 5035 ]
G [ 4872 5025 4834 4700 4616 4629 4690 5428 4232 6154 7113 6246 5218 3707 3887 4276 4596 6312 9770 1261 14049 955 53 836 210 78 571 7285 10430 1315 18447 14622 2545 4385 6471 5285 4693 5212 5455 5894 6687 7576 4952 3630 4149 4272 5935 5094 3853 4711 ]
T [ 5216 5134 5146 5286 5543 5256 5066 4264 6022 5096 4420 4596 4990 4418 5666 3466 6870 2954 2021 7918 3198 657 251 1461 7364 316 15635 3336 1603 12412 853 2150 5348 4462 3021 4381 5198 5055 4930 4869 4166 3922 4550 3879 4896 6638 5243 3967 4061 4493 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.02 0.06 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.02 0.04 0.00 0.02 0.03 0.00 0.05 0.12 -0.02 0.12 0.16 0.09 0.12 0.16 0.03 -0.01 0.06 0.08 -0.01 -0.01 0.06 0.04 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.01 0.12 -0.02 -0.02 0.02 -0.04 -0.01 0.01 0.06 0.12 -0.01 0.16 0.11 -0.01 0.04 0.05 0.03 0.01 0.02 0.03 ]
T [ 0.00 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.06 0.05 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1375

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 1310

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 612

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 408

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 293

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages