Detailed information of deep learning profile BP000351.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in cardiac muscle cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000351.1
Cell line/tissue: cardiac muscle cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR713SXF
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4268 3790 3604 5112 6506 4797 3659 4389 3565 3954 4566 4726 4742 4915 4241 3011 4239 5216 2098 952 11396 1623 3130 15336 326 6430 1673 445 810 3528 6828 2180 3071 6308 3510 5376 4165 4900 4302 4188 4971 5800 4237 4851 5038 5093 5007 4957 4855 4833 ]
C [ 4741 3724 5083 6049 4364 4036 3443 4903 7803 6930 6039 5514 5191 4656 5436 6596 4425 2503 14213 17863 1440 9888 7558 603 99 217 823 293 1546 12806 1962 9504 6149 4704 4081 4003 4044 5184 6061 6856 5873 4502 5177 4753 4632 4765 4789 4872 5042 4976 ]
G [ 4949 6589 6517 3915 4599 4707 4573 4532 3427 3749 4411 4763 4580 4192 4877 3226 6234 8199 1802 413 3263 7247 1862 2127 18925 12606 11487 18311 15489 1292 9337 5336 2508 5854 5340 4499 7688 5325 5277 3715 3949 5136 5400 5396 5288 4793 4828 5287 5346 5140 ]
T [ 5568 5423 4322 4450 4057 5986 7851 5702 4731 4893 4510 4523 5013 5763 4972 6693 4628 3608 1413 298 3427 768 6976 1460 176 273 5543 477 1681 1900 1399 2506 7798 2660 6595 5648 3629 4117 3886 4767 4733 4088 4712 4526 4568 4875 4902 4410 4283 4577 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.16 -0.02 0.09 0.04 -0.01 -0.02 -0.07 -0.00 -0.04 -0.03 0.11 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.06 0.05 -0.02 0.02 0.16 0.12 0.09 0.15 0.12 -0.02 0.12 0.04 -0.01 0.02 0.02 0.00 0.03 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.04 -0.07 -0.02 -0.05 0.05 -0.03 -0.04 -0.06 0.02 -0.04 0.00 -0.02 -0.06 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages