Detailed information of deep learning profile BP000351.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in cardiac muscle cell using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000351.1
Cell line/tissue: cardiac muscle cell
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR713SXF
Model: BPNet
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Contribution weight matrix (CWM)

A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

A [ 4577 4283 4410 4902 4875 4568 4526 4712 4088 4733 4767 3886 4117 3629 5648 6595 2660 7798 2506 1399 1900 1681 477 5543 273 176 1460 6976 768 3427 298 1413 3608 4628 6693 4972 5763 5013 4523 4510 4893 4731 5702 7851 5986 4057 4450 4322 5423 5568 ]
C [ 5140 5346 5287 4828 4793 5288 5396 5400 5136 3949 3715 5277 5325 7688 4499 5340 5854 2508 5336 9337 1292 15489 18311 11487 12606 18925 2127 1862 7247 3263 413 1802 8199 6234 3226 4877 4192 4580 4763 4411 3749 3427 4532 4573 4707 4599 3915 6517 6589 4949 ]
G [ 4976 5042 4872 4789 4765 4632 4753 5177 4502 5873 6856 6061 5184 4044 4003 4081 4704 6149 9504 1962 12806 1546 293 823 217 99 603 7558 9888 1440 17863 14213 2503 4425 6596 5436 4656 5191 5514 6039 6930 7803 4903 3443 4036 4364 6049 5083 3724 4741 ]
T [ 4833 4855 4957 5007 5093 5038 4851 4237 5800 4971 4188 4302 4900 4165 5376 3510 6308 3071 2180 6828 3528 810 445 1673 6430 326 15336 3130 1623 11396 952 2098 5216 4239 3011 4241 4915 4742 4726 4566 3954 3565 4389 3659 4797 6506 5112 3604 3790 4268 ]

Hypothetical CWM

A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.06 -0.02 0.00 -0.04 0.02 -0.06 -0.04 -0.03 0.05 -0.05 -0.02 -0.07 -0.04 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.03 0.00 0.02 0.02 -0.01 0.04 0.12 -0.02 0.12 0.15 0.09 0.12 0.16 0.02 -0.02 0.05 0.06 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.06 -0.02 0.11 -0.03 -0.04 -0.00 -0.07 -0.02 -0.01 0.04 0.09 -0.02 0.16 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.05 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages