Detailed information of deep learning profile BP000349.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000349.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR699BRV
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.06 0.08 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.10 0.00 0.00 0.00 -0.00 -0.00 0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4625 4514 4467 4310 4485 5231 4959 4646 4615 4735 4342 5039 4966 4028 4220 3740 5831 6986 2497 8020 2313 1226 1771 1640 327 6141 278 244 1690 7330 827 3102 360 1556 3606 4654 6762 5169 5641 4945 4646 4567 5103 4990 5676 7409 5866 4319 4672 4553 ]
C [ 5376 5309 5268 5453 5405 4786 4744 5385 5517 5545 5323 3667 3449 5137 5495 8143 4519 5144 5940 2455 5908 9858 973 16489 18976 11225 12043 19142 2373 1995 7090 3892 427 1828 8534 6282 3446 5101 4373 4815 5032 4646 3990 3621 4797 4745 4969 4903 4161 6258 ]
G [ 5100 5048 5088 5081 4897 4710 4706 4731 4772 5414 4362 6158 7192 6371 5294 3721 4006 4281 4783 6434 9850 1351 13868 1156 189 1015 274 130 709 7222 10238 1376 17797 14215 2622 4468 6622 5317 4866 5295 5409 5992 6645 7391 5025 3870 4255 4374 5911 5179 ]
T [ 4816 5046 5094 5073 5130 5190 5508 5155 5013 4223 5890 5053 4310 4381 4908 4313 5561 3506 6697 3008 1846 7482 3305 632 425 1536 7322 401 15145 3370 1762 11547 1333 2318 5155 4513 3087 4330 5037 4862 4830 4712 4179 3915 4419 3893 4827 6321 5173 3927 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.04 -0.01 -0.07 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.03 0.07 -0.05 -0.02 -0.08 -0.03 -0.02 -0.01 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.04 0.01 0.03 0.04 -0.00 0.06 0.15 -0.02 0.15 0.19 0.11 0.15 0.20 0.04 -0.01 0.06 0.09 -0.02 -0.02 0.07 0.05 0.01 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.06 0.08 -0.02 0.15 -0.02 -0.03 0.01 -0.07 -0.02 0.01 0.06 0.13 -0.01 0.19 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.03 -0.02 -0.05 -0.05 -0.07 0.06 -0.04 0.09 -0.01 -0.02 0.04 -0.02 -0.01 0.02 -0.01 -0.02 0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2627

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 875

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages