Detailed information of deep learning profile BP000348.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial artery using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000348.1
Cell line/tissue: tibial artery
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR699BEK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 -0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.08 0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4006 3992 4135 5007 4764 4435 4406 4468 3679 4676 4614 3514 3747 3309 5280 6261 2043 7399 1884 1058 1644 1474 184 6079 185 125 985 6739 527 2355 132 1111 3314 4248 7009 4918 5618 4697 4220 4092 4847 4582 5454 7878 5714 3628 4157 4110 5055 5193 ]
C [ 4645 4633 4850 3943 3949 4529 4843 4554 4674 2798 2583 4209 4675 7422 3842 4735 5123 2013 5444 8317 828 14780 17175 9764 10383 17282 1552 1336 6020 2156 136 1121 7502 5912 2579 4293 3488 3835 3965 3755 3029 2612 3888 3717 4193 4064 3066 5949 6043 4409 ]
G [ 4336 4371 4103 3995 3813 3947 4006 4889 3476 5533 6767 5770 4764 3085 3304 3550 4119 5674 8454 1137 12501 911 93 778 164 95 473 6731 10169 856 17025 13759 1928 3612 5619 4317 3890 4444 4895 5537 6113 7260 4233 2814 3358 3594 5518 4438 3069 4176 ]
T [ 4745 4736 4644 4787 5206 4821 4477 3821 5903 4725 3768 4239 4546 3916 5306 3186 6447 2646 1950 7220 2759 567 280 1111 7000 230 14722 2926 1016 12365 439 1741 4988 3960 2525 4204 4736 4756 4652 4348 3743 3278 4157 3323 4467 6446 4991 3235 3565 3954 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.02 ]
C [ 0.01 0.03 -0.00 0.02 0.02 -0.01 0.04 0.11 -0.03 0.11 0.15 0.09 0.12 0.17 0.03 -0.02 0.06 0.08 -0.02 -0.03 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.04 0.05 -0.02 0.11 -0.03 -0.03 0.00 -0.06 -0.01 0.00 0.06 0.11 -0.02 0.18 0.11 -0.02 0.03 0.04 0.02 0.00 ]
T [ 0.00 0.00 0.01 -0.01 0.03 -0.01 -0.01 0.02 -0.01 -0.05 -0.04 -0.06 0.05 -0.04 0.09 -0.01 -0.03 0.04 -0.03 -0.01 0.03 -0.01 -0.02 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2987

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages