Detailed information of deep learning profile BP000347.1

  1. Home
  2. Deep Learning Profile > BP000347.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in breast epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000347.1
Cell line/tissue: breast epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR697YIN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.07 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3924 3540 3296 5002 6484 4505 3328 4187 3276 3715 4395 4521 4709 4756 4093 2606 3977 5015 1706 418 12085 1082 2827 14743 279 6944 1194 424 690 2939 7238 2055 2765 6370 3295 5291 3976 4572 4168 3808 4753 5715 3803 4579 4790 5122 4660 4567 4677 4636 ]
C [ 4224 2986 4453 5597 3555 3272 2735 4278 7511 6280 5532 4904 4532 3999 4467 5679 3593 1923 13797 17118 933 10105 6822 476 138 202 866 287 1078 12218 1280 8406 5626 4155 3512 3306 3123 4784 5658 6650 5443 3601 4828 4184 4033 3984 4105 4259 4444 4410 ]
G [ 4425 6128 6077 3037 4145 4168 3754 3888 2607 2960 3766 4106 3884 3563 4289 2564 5937 7500 1133 141 2314 6100 1349 1568 17261 10304 9583 16711 14413 875 8177 5412 2096 5148 4782 3966 7367 4713 4361 2750 2861 4704 4691 4679 4416 3960 4141 4801 4683 4562 ]
T [ 5245 5164 3992 4182 3634 5873 8001 5465 4424 4863 4125 4287 4693 5500 4969 6969 4311 3380 1182 141 2486 531 6820 1031 140 368 6175 396 1637 1786 1123 1945 7331 2145 6229 5255 3352 3749 3631 4610 4761 3798 4496 4376 4579 4752 4912 4191 4014 4210 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.00 0.02 0.05 0.03 -0.01 0.11 0.16 -0.02 0.11 0.05 0.00 -0.01 -0.05 0.01 -0.03 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.00 0.00 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.04 -0.02 -0.01 0.07 0.05 -0.01 0.02 0.16 0.11 0.08 0.14 0.10 -0.02 0.10 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.01 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.03 -0.04 -0.07 0.02 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 961

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 497

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 291

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages