Detailed information of deep learning profile BP000347.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in breast epithelium using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000347.1
Cell line/tissue: breast epithelium
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR697YIN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4210 4014 4191 4912 4752 4579 4376 4496 3798 4761 4610 3631 3749 3352 5255 6229 2145 7331 1945 1123 1786 1637 396 6175 368 140 1031 6820 531 2486 141 1182 3380 4311 6969 4969 5500 4693 4287 4125 4863 4424 5465 8001 5873 3634 4182 3992 5164 5245 ]
C [ 4562 4683 4801 4141 3960 4416 4679 4691 4704 2861 2750 4361 4713 7367 3966 4782 5148 2096 5412 8177 875 14413 16711 9583 10304 17261 1568 1349 6100 2314 141 1133 7500 5937 2564 4289 3563 3884 4106 3766 2960 2607 3888 3754 4168 4145 3037 6077 6128 4425 ]
G [ 4410 4444 4259 4105 3984 4033 4184 4828 3601 5443 6650 5658 4784 3123 3306 3512 4155 5626 8406 1280 12218 1078 287 866 202 138 476 6822 10105 933 17118 13797 1923 3593 5679 4467 3999 4532 4904 5532 6280 7511 4278 2735 3272 3555 5597 4453 2986 4224 ]
T [ 4636 4677 4567 4660 5122 4790 4579 3803 5715 4753 3808 4168 4572 3976 5291 3295 6370 2765 2055 7238 2939 690 424 1194 6944 279 14743 2827 1082 12085 418 1706 5015 3977 2606 4093 4756 4709 4521 4395 3715 3276 4187 3328 4505 6484 5002 3296 3540 3924 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.02 -0.07 -0.04 -0.03 0.05 -0.05 -0.03 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.01 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.10 -0.02 0.10 0.14 0.08 0.11 0.16 0.02 -0.01 0.05 0.07 -0.01 -0.02 0.04 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.00 0.00 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.03 0.01 -0.05 -0.01 0.00 0.05 0.11 -0.02 0.16 0.11 -0.01 0.03 0.05 0.02 0.00 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 961

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 497

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 406

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 291

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000081.1 CTCF ENCSR000DTO HCT116 Homo sapiens MA0139.2
BP000082.1 CTCF ENCSR000DTR epithelial cell of esophagus Homo sapiens MA0139.2
BP000083.1 CTCF ENCSR000DTW HEK293 Homo sapiens MA0139.2
BP000084.1 CTCF ENCSR000DUB HeLa-S3 Homo sapiens MA0139.2
BP000085.1 CTCF ENCSR000DUG HepG2 Homo sapiens MA0139.2
BP000086.1 CTCF ENCSR000DUH foreskin fibroblast Homo sapiens MA0139.2
BP000087.1 CTCF ENCSR000DUM HFF-Myc Homo sapiens MA0139.2
BP000088.1 CTCF ENCSR000DUP HL-60 Homo sapiens MA0139.2
BP000089.1 CTCF ENCSR000DUS mammary epithelial cell Homo sapiens MA0139.2
BP000090.1 CTCF ENCSR000DUU fibroblast of mammary gland Homo sapiens MA0139.2
Showing 10 profiles of page 9 from 45 pages