Detailed information of deep learning profile BP000346.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000346.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR692ILH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.12 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.11 0.05 0.03 0.10 0.07 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3665 3102 2799 4794 6563 4284 2945 3952 2866 3463 4302 4534 4666 4726 4080 2209 3572 4940 1540 316 12519 760 2710 15103 205 6788 831 311 546 2391 7262 1831 2412 6457 3103 5368 3775 4227 4156 3555 4580 6045 3484 4441 4735 5411 4683 4428 4571 4454 ]
C [ 4334 2820 4583 5912 3513 3214 2510 4194 7826 6496 5799 5203 4657 3851 4244 5713 3509 1700 14201 17103 602 10705 7254 448 81 172 561 247 862 12744 1020 8533 6129 4277 3630 3293 3073 5057 6151 7387 6007 3325 5084 4138 4146 3843 3948 4225 4522 4630 ]
G [ 4527 6549 6442 2903 4298 4314 3851 4018 2608 2973 3780 3974 3889 3493 4611 2363 6471 7950 934 78 2471 5674 1131 1261 17187 10465 9868 16726 14737 836 8428 5539 1989 5022 4831 3849 7631 4775 3983 2355 2517 4835 4757 4799 4427 3817 3989 5130 4755 4692 ]
T [ 5061 5116 3763 3978 3213 5775 8281 5423 4287 4655 3706 3876 4375 5517 4652 7302 4035 2997 912 90 1995 448 6492 775 114 162 6327 303 1442 1616 877 1684 7057 1831 6023 5077 3108 3528 3297 4290 4483 3382 4262 4209 4279 4516 4967 3804 3739 3811 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.01 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.06 -0.03 0.03 -0.04 -0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.02 0.01 0.01 0.01 0.04 0.02 -0.01 0.08 0.12 -0.02 0.08 0.04 0.00 -0.01 -0.04 -0.00 -0.02 -0.02 0.08 -0.01 0.04 0.02 0.01 0.01 0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.02 0.04 -0.01 -0.02 0.05 0.04 -0.01 0.02 0.11 0.09 0.07 0.11 0.08 -0.02 0.07 0.03 -0.01 0.02 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.05 -0.01 -0.03 0.04 -0.03 -0.03 -0.05 0.02 -0.03 0.01 -0.01 -0.04 -0.01 0.02 -0.02 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 136

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages