Detailed information of deep learning profile BP000345.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in tibial nerve using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000345.1
Cell line/tissue: tibial nerve
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR689VEF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4234 3676 3534 5199 6789 4714 3567 4333 3548 3933 4570 4771 4955 5030 4395 2773 4192 5295 1969 507 12676 1241 2984 15727 255 7481 1062 345 491 2824 7749 1873 2644 6898 3348 5672 4087 4867 4389 3935 5016 6183 4005 4807 5146 5599 5000 4839 4960 4861 ]
C [ 4415 3206 4687 5805 3742 3519 2979 4481 7510 6432 5764 5228 4854 4185 4730 5893 3847 1993 14202 17897 959 10420 7089 497 65 140 708 124 721 13553 989 9563 6110 4465 3699 3392 3291 5040 6084 7329 5957 3818 5122 4256 4251 4097 4214 4393 4678 4691 ]
G [ 4604 6464 6266 3372 4399 4427 4011 4179 2942 3262 4131 4304 4070 3702 4578 2855 6224 8060 1303 223 2682 6529 1436 1559 18376 11006 10443 18081 16024 699 9046 5472 1864 5405 4890 4035 7963 4855 4595 2720 2913 4943 4929 5103 4746 4089 4234 5187 4962 4920 ]
T [ 5550 5457 4316 4427 3873 6143 8246 5810 4803 5176 4338 4500 4924 5886 5100 7282 4540 3455 1329 176 2486 613 7294 1020 107 176 6590 253 1567 1727 1019 1895 8185 2035 6866 5704 3462 4041 3735 4819 4917 3859 4747 4637 4660 5018 5355 4384 4203 4331 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.08 -0.05 0.05 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.03 0.10 0.05 -0.01 -0.02 -0.06 0.00 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.05 -0.03 -0.02 0.07 0.04 -0.02 0.02 0.16 0.12 0.09 0.15 0.11 -0.03 0.12 0.04 -0.01 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 541

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages