Detailed information of deep learning profile BP000344.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000344.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR689LFJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.12 0.18 0.05 0.07 0.18 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.18 0.09 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4688 4501 4697 5535 5344 4982 4870 4938 4230 5200 5100 4023 4285 3749 6196 7218 2331 8496 2176 1129 1786 1705 252 6821 209 186 1421 7803 761 2773 219 1541 3723 4805 7559 5301 6106 5179 4853 4695 5288 5076 5950 8254 6437 4299 4818 4681 5711 5797 ]
C [ 5317 5393 5544 4652 4580 5221 5481 5500 5431 3361 3120 5007 5512 8443 4328 5313 5932 2220 5965 9906 778 17094 19574 11117 11970 19608 1937 1793 7124 3231 268 1617 8750 6640 3199 5301 4242 4683 4846 4547 3841 3476 4690 4595 4846 4806 3888 6521 6672 5126 ]
G [ 5119 5156 4831 4764 4574 4668 4800 5530 4180 6441 7721 6588 5434 3603 3837 4245 4772 6666 10234 1071 14712 960 125 1068 208 114 706 7254 10925 1118 19126 15000 2364 4290 6494 5135 4626 5245 5582 6173 6875 7811 5034 3539 4045 4279 6136 5139 3848 4808 ]
T [ 5155 5229 5207 5328 5781 5408 5128 4311 6438 5277 4338 4661 5048 4484 5918 3503 7244 2897 1904 8173 3003 520 328 1273 7892 371 16215 3429 1469 13157 666 2121 5442 4544 3027 4542 5305 5172 4998 4864 4275 3916 4605 3891 4951 6895 5437 3938 4048 4548 ]

Hypothetical CWM

   
A [ -0.01 -0.01 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.02 -0.04 0.03 -0.08 -0.04 -0.03 0.07 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.02 0.04 0.00 0.03 0.03 0.00 0.06 0.14 -0.02 0.14 0.18 0.11 0.14 0.18 0.04 -0.01 0.07 0.10 -0.01 -0.02 0.07 0.05 0.01 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.01 0.15 -0.02 -0.03 0.03 -0.04 -0.00 0.02 0.07 0.13 -0.01 0.18 0.12 -0.01 0.04 0.06 0.03 0.01 0.02 0.02 ]
T [ 0.01 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.03 -0.01 -0.05 -0.04 -0.06 0.06 -0.04 0.09 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.01 -0.02 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1277

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 349

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 268

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 179

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 122

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages