Detailed information of deep learning profile BP000343.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000343.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR687APM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4539 3971 3803 5538 7244 5062 3671 4647 3721 4174 4887 5035 5320 5324 4671 2805 4449 5677 1930 490 13575 1257 3132 16741 256 7900 1132 340 451 2851 8369 2035 2822 7356 3605 6053 4378 5141 4655 4215 5304 6655 4306 5175 5494 5969 5337 5172 5351 5174 ]
C [ 4582 3412 4923 6026 3940 3633 3155 4739 7939 6870 6141 5553 5089 4495 4937 6234 3997 2126 15286 19051 961 11155 7537 602 109 214 838 174 711 14628 1000 10069 6510 4736 3991 3570 3493 5394 6483 7599 6357 3967 5357 4504 4328 4289 4488 4764 4919 4918 ]
G [ 4825 6866 6539 3507 4664 4587 4237 4363 3138 3383 4311 4587 4321 3881 4817 3022 6650 8462 1368 219 2863 6951 1553 1553 19456 11671 10641 19163 17163 667 9529 5881 2019 5700 5154 4224 8335 5168 4833 2910 3064 5160 5189 5319 5036 4309 4451 5323 5169 5191 ]
T [ 5995 5692 4676 4870 4093 6659 8878 6192 5143 5514 4602 4766 5211 6241 5516 7880 4845 3676 1357 181 2542 578 7719 1045 120 156 7330 264 1616 1795 1043 1956 8590 2149 7191 6094 3735 4238 3970 5217 5216 4159 5089 4943 5083 5374 5665 4682 4502 4658 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.01 -0.01 -0.03 0.03 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.01 0.00 ]
C [ 0.03 0.02 0.01 0.02 0.05 0.03 -0.01 0.11 0.16 -0.02 0.10 0.05 -0.00 -0.01 -0.06 0.00 -0.03 -0.03 0.12 -0.02 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.16 0.12 0.09 0.15 0.12 -0.02 0.11 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.08 -0.03 -0.06 0.05 -0.04 -0.04 -0.07 0.02 -0.04 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 736

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages