Detailed information of deep learning profile BP000342.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in uterus using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000342.1
Cell line/tissue: uterus
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR684PGO
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4773 4758 4758 5793 5462 5276 5096 5165 4250 5373 5286 4160 4340 3899 6180 7297 2398 8620 2236 1201 1903 1771 315 6923 237 150 1155 7850 611 2848 174 1390 3819 4968 7916 5595 6447 5396 4917 4778 5605 5232 6296 8863 6614 4261 4870 4748 5853 5994 ]
C [ 5532 5548 5908 4829 4803 5373 5692 5588 5748 3606 3350 5145 5702 8732 4612 5625 6145 2446 6252 10356 947 17485 20083 11701 12478 20500 1919 1868 7196 3684 264 1427 9102 7184 3218 5232 4282 4743 4866 4661 3831 3368 4821 4658 5045 4973 3988 7048 7254 5363 ]
G [ 5367 5354 5122 4869 4657 4796 4931 5874 4399 6742 8015 6847 5758 3872 4144 4386 5164 6835 10357 1408 14699 1113 230 998 213 106 702 7992 11983 912 19937 16151 2361 4352 6912 5355 4727 5434 5799 6623 7172 8546 5179 3519 4144 4436 6562 5305 3785 5050 ]
T [ 5349 5361 5233 5530 6099 5576 5302 4394 6624 5300 4370 4869 5221 4518 6085 3713 7314 3120 2176 8056 3472 652 393 1399 8093 265 17245 3311 1231 13577 646 2053 5739 4517 2975 4839 5565 5448 5439 4959 4413 3875 4725 3981 5218 7351 5601 3920 4129 4614 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.03 0.02 -0.06 -0.03 -0.03 0.04 -0.05 -0.02 -0.06 -0.03 -0.01 -0.00 0.01 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.03 0.09 -0.02 0.10 0.13 0.07 0.10 0.14 0.02 -0.01 0.04 0.06 -0.02 -0.02 0.04 0.03 0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.09 -0.03 -0.03 0.00 -0.05 -0.01 -0.00 0.04 0.09 -0.02 0.14 0.09 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.04 -0.05 0.04 -0.04 0.07 -0.02 -0.02 0.03 -0.02 -0.01 0.01 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 607

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 125

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages