Detailed information of deep learning profile BP000341.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000341.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR680WMF
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.09 0.17 -0.00 0.06 0.02 0.00 0.00 0.00 0.00 0.00 0.00 0.10 -0.00 0.03 0.01 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.18 0.12 -0.00 0.06 0.02 -0.00 0.01 0.00 -0.00 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 0.00 ]

Frequency matrix

       
A [ 4267 3863 3782 5036 6173 4611 3755 4345 3843 4160 4485 4666 4700 5024 4171 2891 4277 5146 2142 602 12106 1479 3292 14724 402 7266 1269 316 446 2907 7535 1783 2718 6669 3256 5487 4226 4729 4321 4127 4893 6010 4037 4816 5109 5459 5033 4853 4927 4917 ]
C [ 4474 3702 4865 5555 4061 3874 3516 4597 6937 6160 5672 5151 4967 4394 4824 6120 4173 2345 13650 17862 1137 9892 6719 684 117 201 1013 94 786 13619 949 9590 6119 4500 4042 3647 3405 5099 6096 7084 5987 3899 5133 4472 4457 4405 4420 4501 4703 4825 ]
G [ 4836 6172 5976 3870 4521 4573 4255 4518 3343 3693 4276 4548 4455 4059 4919 3045 6012 7985 1626 290 2950 6775 1806 2037 18200 11271 10221 18300 16128 770 9511 5503 2098 5647 4822 4013 7770 5148 4774 2986 3159 5003 5140 5129 4814 4336 4320 5194 5105 4938 ]
T [ 5379 5219 4333 4495 4201 5898 7430 5496 4833 4943 4523 4591 4834 5479 5042 6900 4494 3480 1538 202 2763 810 7139 1511 237 218 6453 246 1596 1660 961 2080 8021 2140 6836 5809 3555 3980 3765 4759 4917 4044 4646 4539 4576 4756 5183 4408 4221 4276 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.08 -0.04 0.05 -0.06 -0.04 -0.06 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 0.01 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.04 -0.01 0.12 0.18 -0.01 0.12 0.06 0.02 -0.00 -0.04 0.02 -0.02 -0.02 0.15 -0.01 0.08 0.05 0.04 0.02 0.02 0.01 0.03 0.03 ]
G [ 0.01 0.02 0.02 0.02 0.01 0.04 0.07 -0.01 -0.01 0.09 0.06 -0.00 0.03 0.18 0.14 0.11 0.18 0.14 -0.02 0.15 0.06 0.00 0.04 0.03 0.01 0.05 0.02 0.02 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.05 0.06 -0.03 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.00 -0.00 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 981

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 487

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 365

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 276

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 209

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 151

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_11

Num. of seqlets: 140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_12

Num. of seqlets: 140

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_13

Num. of seqlets: 111

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages