Detailed information of deep learning profile BP000318.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000318.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR595BPR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.15 -0.00 0.06 0.02 -0.00 -0.00 -0.00 0.00 -0.00 0.00 0.08 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.07 0.05 0.14 0.09 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3911 3436 3344 4797 6205 4403 3367 4109 3307 3691 4250 4394 4483 4555 4046 2553 3912 4882 1782 594 11301 1232 2770 14602 264 6341 1169 393 650 2876 6740 1952 2700 6133 3317 5087 3865 4521 4014 3861 4608 5441 3749 4429 4615 5022 4608 4523 4495 4501 ]
C [ 4401 3371 4684 5639 3812 3671 3107 4396 7352 6418 5591 5081 4857 4297 4792 6069 4023 2140 13763 17069 1075 9951 7069 646 112 285 1038 344 1240 12351 1440 8685 5749 4399 3822 3616 3515 4826 5827 6529 5661 4003 4941 4353 4347 4233 4300 4463 4629 4643 ]
G [ 4657 6237 5995 3548 4415 4471 4089 4243 3074 3332 4130 4371 4152 3846 4591 2955 5916 7809 1340 214 3119 6313 1542 1720 17561 11189 10229 16967 14605 1056 8691 5395 2356 5304 4818 4208 7371 4926 4601 3201 3300 4838 4966 4984 4747 4289 4394 5019 4940 4895 ]
T [ 5105 5030 4051 4090 3642 5529 7511 5326 4341 4633 4103 4228 4582 5376 4645 6497 4223 3243 1189 197 2579 578 6693 1106 137 259 5638 370 1579 1791 1203 2042 7269 2238 6117 5163 3323 3801 3632 4483 4505 3792 4418 4308 4365 4530 4772 4069 4010 4035 ]

Hypothetical CWM

   
A [ -0.00 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.08 -0.05 0.04 -0.06 -0.04 -0.05 -0.01 0.02 -0.02 -0.01 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.04 0.04 -0.01 0.11 0.16 -0.02 0.11 0.05 -0.00 -0.01 -0.06 0.00 -0.04 -0.03 0.11 -0.01 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.00 0.01 0.01 0.01 0.00 0.03 0.05 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.15 0.12 0.09 0.15 0.11 -0.01 0.11 0.04 -0.00 0.02 0.02 0.00 0.03 0.01 ]
T [ 0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.05 0.05 -0.04 -0.03 -0.07 0.02 -0.04 0.00 -0.02 -0.05 -0.01 0.02 -0.03 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 501

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 267

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 40

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages