Detailed information of deep learning profile BP000318.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in spleen using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000318.1
Cell line/tissue: spleen
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR595BPR
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.09 0.14 0.05 0.07 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.08 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.15 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4035 4010 4069 4772 4530 4365 4308 4418 3792 4505 4483 3632 3801 3323 5163 6117 2238 7269 2042 1203 1791 1579 370 5638 259 137 1106 6693 578 2579 197 1189 3243 4223 6497 4645 5376 4582 4228 4103 4633 4341 5326 7511 5529 3642 4090 4051 5030 5105 ]
C [ 4895 4940 5019 4394 4289 4747 4984 4966 4838 3300 3201 4601 4926 7371 4208 4818 5304 2356 5395 8691 1056 14605 16967 10229 11189 17561 1720 1542 6313 3119 214 1340 7809 5916 2955 4591 3846 4152 4371 4130 3332 3074 4243 4089 4471 4415 3548 5995 6237 4657 ]
G [ 4643 4629 4463 4300 4233 4347 4353 4941 4003 5661 6529 5827 4826 3515 3616 3822 4399 5749 8685 1440 12351 1240 344 1038 285 112 646 7069 9951 1075 17069 13763 2140 4023 6069 4792 4297 4857 5081 5591 6418 7352 4396 3107 3671 3812 5639 4684 3371 4401 ]
T [ 4501 4495 4523 4608 5022 4615 4429 3749 5441 4608 3861 4014 4521 3865 5087 3317 6133 2700 1952 6740 2876 650 393 1169 6341 264 14602 2770 1232 11301 594 1782 4882 3912 2553 4046 4555 4483 4394 4250 3691 3307 4109 3367 4403 6205 4797 3344 3436 3911 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.03 0.02 -0.01 -0.05 -0.02 0.00 -0.04 0.02 -0.07 -0.03 -0.04 0.05 -0.05 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.00 0.04 0.11 -0.01 0.11 0.15 0.09 0.12 0.15 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.05 0.03 0.00 0.01 0.01 0.01 0.00 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.01 0.11 -0.03 -0.04 0.00 -0.06 -0.01 -0.00 0.05 0.11 -0.02 0.16 0.11 -0.01 0.04 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.01 -0.02 0.02 -0.01 -0.05 -0.04 -0.06 0.04 -0.05 0.08 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 501

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 493

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 267

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 53

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_10

Num. of seqlets: 40

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages