Detailed information of deep learning profile BP000317.1

  1. Home
  2. Deep Learning Profile > BP000317.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000317.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR594NSU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.11 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4090 3652 3440 4998 6321 4555 3543 4182 3592 3847 4417 4691 4786 4746 4276 2622 4084 5030 1892 683 11939 1241 3008 15097 300 7165 1288 358 499 2805 7301 1901 2653 6558 3166 5442 4007 4636 4223 3786 4756 5892 3855 4601 4890 5340 4780 4672 4763 4669 ]
C [ 4557 3618 4869 5784 4060 3743 3310 4721 7391 6532 5867 5202 4939 4437 4866 6101 3943 2275 14121 17653 1064 10211 7273 654 91 220 967 186 727 13562 1081 9295 6147 4511 4047 3678 3467 5090 6192 7172 5985 4025 5317 4453 4371 4269 4445 4629 4874 4882 ]
G [ 4829 6331 6197 3654 4568 4636 4289 4426 3160 3495 4271 4485 4348 3990 4676 2960 6386 8032 1484 231 3161 6636 1717 1797 18167 11150 10080 17875 15996 667 9301 5650 2219 5530 5025 4110 7838 5140 4614 3039 3258 5005 5016 5324 4939 4302 4428 5207 5052 4956 ]
T [ 5250 5125 4220 4290 3777 5792 7584 5397 4583 4852 4171 4348 4653 5553 4908 7043 4313 3389 1229 159 2562 638 6728 1178 168 191 6391 307 1504 1692 1043 1880 7707 2127 6488 5496 3414 3860 3697 4729 4727 3804 4538 4348 4526 4815 5073 4218 4037 4219 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.06 0.05 -0.07 -0.05 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.01 0.00 ]
C [ 0.02 0.02 0.01 0.03 0.05 0.03 -0.02 0.12 0.18 -0.03 0.12 0.06 -0.00 -0.01 -0.06 0.01 -0.04 -0.03 0.12 -0.02 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 0.00 0.04 0.06 -0.03 -0.02 0.08 0.05 -0.02 0.03 0.18 0.13 0.10 0.17 0.13 -0.02 0.12 0.05 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.01 -0.04 -0.09 -0.04 -0.06 0.05 -0.04 -0.04 -0.09 0.02 -0.05 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1074

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 583

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 375

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 130

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages