Detailed information of deep learning profile BP000317.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in gastrocnemius medialis using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000317.1
Cell line/tissue: gastrocnemius medialis
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR594NSU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.11 0.17 0.05 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.06 -0.00 0.17 0.09 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4219 4037 4218 5073 4815 4526 4348 4538 3804 4727 4729 3697 3860 3414 5496 6488 2127 7707 1880 1043 1692 1504 307 6391 191 168 1178 6728 638 2562 159 1229 3389 4313 7043 4908 5553 4653 4348 4171 4852 4583 5397 7584 5792 3777 4290 4220 5125 5250 ]
C [ 4956 5052 5207 4428 4302 4939 5324 5016 5005 3258 3039 4614 5140 7838 4110 5025 5530 2219 5650 9301 667 15996 17875 10080 11150 18167 1797 1717 6636 3161 231 1484 8032 6386 2960 4676 3990 4348 4485 4271 3495 3160 4426 4289 4636 4568 3654 6197 6331 4829 ]
G [ 4882 4874 4629 4445 4269 4371 4453 5317 4025 5985 7172 6192 5090 3467 3678 4047 4511 6147 9295 1081 13562 727 186 967 220 91 654 7273 10211 1064 17653 14121 2275 3943 6101 4866 4437 4939 5202 5867 6532 7391 4721 3310 3743 4060 5784 4869 3618 4557 ]
T [ 4669 4763 4672 4780 5340 4890 4601 3855 5892 4756 3786 4223 4636 4007 5442 3166 6558 2653 1901 7301 2805 499 358 1288 7165 300 15097 3008 1241 11939 683 1892 5030 4084 2622 4276 4746 4786 4691 4417 3847 3592 4182 3543 4555 6321 4998 3440 3652 4090 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.03 -0.02 -0.06 -0.03 0.00 -0.05 0.02 -0.09 -0.04 -0.04 0.05 -0.06 -0.04 -0.09 -0.04 -0.01 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.05 0.12 -0.02 0.13 0.17 0.10 0.13 0.18 0.03 -0.02 0.05 0.08 -0.02 -0.03 0.06 0.04 0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.02 0.12 -0.03 -0.04 0.01 -0.06 -0.01 -0.00 0.06 0.12 -0.03 0.18 0.12 -0.02 0.03 0.05 0.03 0.01 0.02 0.02 ]
T [ 0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.05 -0.07 0.05 -0.06 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1074

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 583

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 375

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 231

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_8

Num. of seqlets: 130

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages