Detailed information of deep learning profile BP000316.1

  1. Home
  2. Deep Learning Profile > BP000316.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000316.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR587KPW
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.08 0.13 0.04 0.05 0.14 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4024 3886 4078 5005 4792 4436 4294 4373 3576 4634 4500 3459 3663 3196 5308 6280 1886 7511 1669 862 1586 1493 220 6334 177 109 874 6809 509 2148 137 1170 3221 4186 7044 4847 5541 4550 4154 4003 4803 4484 5431 7887 5840 3525 4113 4032 5045 5139 ]
C [ 4520 4631 4860 3887 3758 4412 4807 4680 4724 2564 2339 4077 4697 7633 3741 4666 4923 1747 5372 8468 643 14958 16993 9830 10076 17217 1371 1304 6002 2579 189 1071 7592 6105 2551 4376 3555 3850 4057 3806 3038 2671 3894 3836 4105 4150 3117 5964 6123 4415 ]
G [ 4521 4410 4151 3998 3769 3960 4039 4886 3367 5816 7112 5922 4822 2982 3166 3541 4285 5925 8824 908 12791 746 116 604 162 73 485 6686 10097 709 16815 13625 1839 3512 5579 4305 3726 4461 4896 5565 6188 7137 4225 2712 3257 3589 5516 4423 3083 4172 ]
T [ 4545 4683 4521 4720 5291 4802 4470 3671 5943 4596 3659 4152 4428 3799 5395 3123 6516 2427 1745 7372 2590 413 281 842 7195 211 14880 2811 1002 12174 469 1744 4958 3807 2436 4082 4788 4749 4503 4236 3581 3318 4060 3175 4408 6346 4864 3191 3359 3884 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.02 -0.04 0.02 -0.02 -0.05 -0.02 0.01 -0.03 0.02 -0.07 -0.03 -0.03 0.05 -0.05 -0.02 -0.06 -0.03 -0.02 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.10 -0.02 0.10 0.13 0.08 0.10 0.14 0.02 -0.02 0.04 0.06 -0.02 -0.02 0.04 0.03 -0.01 0.01 0.01 0.01 0.00 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.04 -0.00 -0.05 -0.02 -0.00 0.04 0.09 -0.03 0.14 0.09 -0.01 0.03 0.04 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.04 0.07 -0.01 -0.02 0.03 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 342

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 92

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages