Detailed information of deep learning profile BP000315.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000315.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR585KBH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.05 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.11 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.10 0.04 0.03 0.10 0.07 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 3792 3309 3056 4742 6206 4404 3119 3951 3171 3556 4315 4474 4795 4755 4083 2282 3655 5045 1632 396 12240 927 2701 14987 201 6969 827 242 389 2426 7260 1689 2363 6487 3091 5407 3747 4376 4052 3603 4634 5995 3548 4410 4750 5258 4626 4480 4601 4530 ]
C [ 4143 3019 4473 5500 3607 3179 2661 4250 7342 6173 5629 5030 4532 3750 4154 5500 3435 1736 13685 16812 761 10334 6768 479 75 117 583 93 729 12905 833 8881 6002 4262 3453 3227 3043 4912 5985 7144 5901 3387 4998 4057 3991 3890 4040 4136 4400 4406 ]
G [ 4451 6255 6021 3091 4183 4051 3762 3855 2627 2968 3746 3993 3802 3480 4490 2455 6307 7697 1104 151 2495 5764 1313 1226 17122 10247 9560 16968 15025 662 8574 5372 1724 4974 4725 3725 7564 4636 4071 2372 2479 4643 4669 4749 4417 3718 3917 4955 4627 4602 ]
T [ 5107 4910 3943 4160 3497 5859 7951 5437 4353 4796 3803 3996 4364 5508 4766 7256 4096 3015 1072 134 1997 468 6711 801 95 160 6523 190 1350 1500 826 1551 7404 1770 6224 5134 3139 3569 3385 4374 4479 3468 4278 4277 4335 4627 4910 3922 3865 3955 ]

Hypothetical CWM

   
A [ -0.00 -0.00 -0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.02 0.02 -0.02 -0.02 0.06 -0.03 0.03 -0.04 -0.03 -0.03 -0.01 0.01 -0.02 -0.02 0.02 -0.02 0.01 -0.01 -0.00 ]
C [ 0.02 0.01 0.01 0.01 0.04 0.02 -0.01 0.07 0.11 -0.02 0.07 0.03 -0.00 -0.01 -0.04 0.00 -0.03 -0.02 0.08 -0.02 0.04 0.02 0.02 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.02 0.04 -0.02 -0.02 0.05 0.03 -0.01 0.01 0.10 0.08 0.06 0.10 0.08 -0.02 0.08 0.03 -0.00 0.02 0.01 -0.00 0.02 0.01 ]
T [ -0.00 -0.00 0.01 0.00 0.01 -0.00 -0.01 -0.03 -0.05 -0.02 -0.04 0.03 -0.03 -0.03 -0.05 0.01 -0.03 -0.00 -0.02 -0.04 -0.02 0.02 -0.03 0.01 0.00 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 132

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 43

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages