Detailed information of deep learning profile BP000315.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000315.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR585KBH
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.07 0.10 0.03 0.04 0.10 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.11 0.06 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 3955 3865 3922 4910 4627 4335 4277 4278 3468 4479 4374 3385 3569 3139 5134 6224 1770 7404 1551 826 1500 1350 190 6523 160 95 801 6711 468 1997 134 1072 3015 4096 7256 4766 5508 4364 3996 3803 4796 4353 5437 7951 5859 3497 4160 3943 4910 5107 ]
C [ 4602 4627 4955 3917 3718 4417 4749 4669 4643 2479 2372 4071 4636 7564 3725 4725 4974 1724 5372 8574 662 15025 16968 9560 10247 17122 1226 1313 5764 2495 151 1104 7697 6307 2455 4490 3480 3802 3993 3746 2968 2627 3855 3762 4051 4183 3091 6021 6255 4451 ]
G [ 4406 4400 4136 4040 3890 3991 4057 4998 3387 5901 7144 5985 4912 3043 3227 3453 4262 6002 8881 833 12905 729 93 583 117 75 479 6768 10334 761 16812 13685 1736 3435 5500 4154 3750 4532 5030 5629 6173 7342 4250 2661 3179 3607 5500 4473 3019 4143 ]
T [ 4530 4601 4480 4626 5258 4750 4410 3548 5995 4634 3603 4052 4376 3747 5407 3091 6487 2363 1689 7260 2426 389 242 827 6969 201 14987 2701 927 12240 396 1632 5045 3655 2282 4083 4755 4795 4474 4315 3556 3171 3951 3119 4404 6206 4742 3056 3309 3792 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.00 0.01 -0.03 0.02 -0.02 -0.04 -0.02 -0.00 -0.03 0.01 -0.05 -0.03 -0.03 0.03 -0.04 -0.02 -0.05 -0.03 -0.01 -0.00 0.01 0.00 0.01 -0.00 -0.00 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.00 0.03 0.08 -0.02 0.08 0.10 0.06 0.08 0.10 0.01 -0.01 0.03 0.05 -0.02 -0.02 0.04 0.02 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.01 0.01 0.01 0.01 0.02 0.02 0.04 -0.02 0.08 -0.02 -0.03 0.00 -0.04 -0.01 -0.00 0.03 0.07 -0.02 0.11 0.07 -0.01 0.02 0.04 0.01 0.01 0.01 0.02 ]
T [ -0.00 -0.01 0.01 -0.02 0.02 -0.02 -0.02 0.01 -0.01 -0.03 -0.03 -0.04 0.03 -0.03 0.06 -0.02 -0.02 0.02 -0.02 -0.01 0.01 -0.02 -0.02 -0.00 -0.00 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 190

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 132

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_9

Num. of seqlets: 43

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000031.1 CTCF ENCSR000DKP GM10248 Homo sapiens MA0139.2
BP000032.1 CTCF ENCSR000DKR GM10266 Homo sapiens MA0139.2
BP000033.1 CTCF ENCSR000DKV GM12878 Homo sapiens MA0139.2
BP000034.1 CTCF ENCSR000DKZ GM13976 Homo sapiens MA0139.2
BP000035.1 CTCF ENCSR000DLB GM13977 Homo sapiens MA0139.2
BP000036.1 CTCF ENCSR000DLG GM20000 Homo sapiens MA0139.2
BP000037.1 CTCF ENCSR000DLK H1 Homo sapiens MA0139.2
BP000038.1 CTCF ENCSR000DLO HeLa-S3 Homo sapiens MA0139.2
BP000039.1 CTCF ENCSR000DLS HepG2 Homo sapiens MA0139.2
BP000040.1 CTCF ENCSR000DLW endothelial cell of umbilical vein Homo sapiens MA0139.2
Showing 10 profiles of page 4 from 45 pages