Detailed information of deep learning profile BP000314.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000314.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR585JVS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.09 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4406 3942 3901 4957 6161 4678 3888 4274 3862 4133 4655 4766 4713 4955 4311 3064 4447 5058 2237 828 11322 1703 3344 14614 464 6507 1907 546 781 3664 6813 2063 3108 6306 3423 5415 4106 4762 4283 4207 4787 5596 4180 4790 5050 5319 5022 4954 4768 4935 ]
C [ 4918 4157 5227 5999 4459 4357 3947 5030 7284 6700 5951 5483 5324 4899 5534 6637 4546 2739 13958 18296 1475 9733 7487 802 147 287 1118 275 1537 12852 1706 9685 6355 4916 4452 4189 4059 5323 6352 7109 6026 4444 5387 4869 4730 4802 4808 4942 5144 4954 ]
G [ 5123 6480 6180 4326 4935 5060 4856 4900 3789 4162 4708 5015 4857 4426 5135 3503 6250 8325 1998 373 3417 7462 2281 2555 18849 12622 10845 18438 15617 1282 9791 5526 2485 5942 5312 4596 7950 5551 5130 3621 3951 5524 5557 5535 5414 4830 4994 5450 5484 5359 ]
T [ 5271 5139 4410 4436 4163 5623 7027 5514 4783 4723 4404 4454 4824 5438 4738 6514 4475 3596 1525 221 3504 820 6606 1747 258 302 5848 459 1783 1920 1408 2444 7770 2554 6531 5518 3603 4082 3953 4781 4954 4154 4594 4524 4524 4767 4894 4372 4322 4470 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.00 -0.02 0.03 -0.02 -0.01 0.08 -0.04 0.04 -0.06 -0.04 -0.05 -0.02 0.02 -0.02 -0.02 0.02 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.01 0.10 0.16 -0.01 0.10 0.05 -0.00 -0.02 -0.05 0.00 -0.04 -0.02 0.12 -0.01 0.07 0.05 0.04 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 0.00 0.04 0.05 -0.02 -0.03 0.07 0.05 -0.01 0.03 0.16 0.12 0.10 0.16 0.11 -0.02 0.12 0.05 -0.01 0.03 0.02 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.05 0.05 -0.03 -0.03 -0.07 0.02 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 997

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_8

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages