Detailed information of deep learning profile BP000314.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart right ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000314.1
Cell line/tissue: heart right ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR585JVS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.09 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4470 4322 4372 4894 4767 4524 4524 4594 4154 4954 4781 3953 4082 3603 5518 6531 2554 7770 2444 1408 1920 1783 459 5848 302 258 1747 6606 820 3504 221 1525 3596 4475 6514 4738 5438 4824 4454 4404 4723 4783 5514 7027 5623 4163 4436 4410 5139 5271 ]
C [ 5359 5484 5450 4994 4830 5414 5535 5557 5524 3951 3621 5130 5551 7950 4596 5312 5942 2485 5526 9791 1282 15617 18438 10845 12622 18849 2555 2281 7462 3417 373 1998 8325 6250 3503 5135 4426 4857 5015 4708 4162 3789 4900 4856 5060 4935 4326 6180 6480 5123 ]
G [ 4954 5144 4942 4808 4802 4730 4869 5387 4444 6026 7109 6352 5323 4059 4189 4452 4916 6355 9685 1706 12852 1537 275 1118 287 147 802 7487 9733 1475 18296 13958 2739 4546 6637 5534 4899 5324 5483 5951 6700 7284 5030 3947 4357 4459 5999 5227 4157 4918 ]
T [ 4935 4768 4954 5022 5319 5050 4790 4180 5596 4787 4207 4283 4762 4106 5415 3423 6306 3108 2063 6813 3664 781 546 1907 6507 464 14614 3344 1703 11322 828 2237 5058 4447 3064 4311 4955 4713 4766 4655 4133 3862 4274 3888 4678 6161 4957 3901 3942 4406 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.02 -0.07 -0.03 -0.03 0.05 -0.05 -0.03 -0.07 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.02 0.03 -0.01 0.05 0.12 -0.02 0.11 0.16 0.10 0.12 0.16 0.03 -0.01 0.05 0.07 -0.03 -0.02 0.05 0.04 0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.07 -0.01 0.12 -0.02 -0.04 0.00 -0.05 -0.02 -0.00 0.05 0.10 -0.01 0.16 0.10 -0.01 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.02 -0.02 -0.02 0.02 -0.02 -0.05 -0.04 -0.06 0.04 -0.04 0.08 -0.01 -0.02 0.03 -0.02 -0.00 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 997

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 780

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 154

CWM

PFM

     

HCWM

Motif name: counts.neg_patterns.pattern_8

Num. of seqlets: 25

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000021.1 CTCF ENCSR000BHV A549 Homo sapiens MA0139.2
BP000022.1 CTCF ENCSR000BHW A549 Homo sapiens MA0139.2
BP000023.1 CTCF ENCSR000BIE HepG2 Homo sapiens MA0139.2
BP000024.1 CTCF ENCSR000BLX SK-N-SH Homo sapiens MA0139.2
BP000025.1 CTCF ENCSR000BNH H1 Homo sapiens MA0139.2
BP000026.1 CTCF ENCSR000BNO T47D Homo sapiens MA0139.2
BP000027.1 CTCF ENCSR000BPJ K562 Homo sapiens MA0139.2
BP000028.1 CTCF ENCSR000BQE Ishikawa Homo sapiens MA0139.2
BP000029.1 CTCF ENCSR000BSE HCT116 Homo sapiens MA0139.2
BP000030.1 CTCF ENCSR000DKN H54 Homo sapiens MA0139.2
Showing 10 profiles of page 3 from 45 pages