Detailed information of deep learning profile BP000312.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000312.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR578AKX
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.17 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.05 0.17 0.11 -0.00 0.06 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3637 5055 6393 4606 3561 4219 3637 3937 4477 4651 4777 4898 4289 2814 4289 5074 2004 716 12236 1332 3022 15331 280 7427 1152 308 476 2984 7649 1773 2639 6694 3238 5560 4099 4700 4165 4006 4864 6111 3871 4705 4983 5466 5009 4839 4856 4832 4835 4584 ]
C [ 4737 5523 3958 3729 3207 4586 7199 6336 5720 5149 4855 4314 4764 5935 3896 2224 13871 17560 1012 9933 7125 478 73 157 657 79 805 13229 1005 9446 6150 4556 3827 3444 3305 4954 6202 7179 5989 3748 5110 4312 4169 4171 4271 4430 4713 4672 4637 4756 ]
G [ 6007 3644 4411 4464 4258 4308 3109 3506 4222 4401 4261 3930 4592 3007 6075 7924 1435 223 2804 6767 1543 1679 18201 10932 10428 18040 15815 749 9039 5488 1860 5396 4858 4002 7881 5083 4584 2741 2987 4998 5054 5194 4869 4250 4298 5192 4981 4911 4727 5013 ]
T [ 4313 4472 3932 5895 7668 5581 4749 4915 4275 4493 4801 5552 5049 6938 4434 3472 1384 195 2642 662 7004 1206 140 178 6457 267 1598 1732 1001 1987 8045 2048 6771 5688 3409 3957 3743 4768 4854 3837 4659 4483 4673 4807 5116 4233 4144 4279 4495 4341 ]

Hypothetical CWM

   
A [ 0.01 0.00 -0.02 -0.02 0.02 -0.00 -0.03 0.05 -0.02 -0.01 0.10 -0.05 0.06 -0.06 -0.04 -0.05 -0.02 0.03 -0.02 -0.02 0.03 -0.02 0.02 -0.00 0.00 ]
C [ 0.01 0.02 0.05 0.03 -0.01 0.11 0.18 -0.03 0.11 0.06 -0.00 -0.03 -0.06 -0.00 -0.05 -0.04 0.13 -0.02 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.00 0.04 0.06 -0.03 -0.03 0.08 0.05 -0.02 0.02 0.18 0.13 0.10 0.17 0.13 -0.03 0.13 0.04 -0.01 0.03 0.02 -0.00 0.05 0.02 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.03 -0.05 0.06 -0.03 -0.03 -0.08 0.03 -0.04 0.01 -0.02 -0.07 -0.02 0.04 -0.04 0.03 0.01 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages