Detailed information of deep learning profile BP000311.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in middle frontal area 46 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000311.1
Cell line/tissue: middle frontal area 46
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR575WYM
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.06 -0.00 0.13 0.19 0.06 0.07 0.20 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.01 0.04 -0.00 0.11 0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.10 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4696 4540 4717 5448 5296 4940 4869 4950 4274 5250 5159 4141 4384 3748 6113 7340 2437 8594 2371 1253 1849 1807 307 6772 238 211 1494 7819 761 3118 196 1545 3721 4817 7402 5408 6032 5205 4747 4709 5351 5033 6062 8294 6394 4359 4880 4710 5763 5930 ]
C [ 5363 5385 5502 4677 4660 5242 5518 5476 5474 3505 3238 5062 5398 8262 4467 5155 5986 2241 5786 9885 928 16793 19433 11285 12035 19651 2097 1717 7147 3025 244 1569 8693 6484 3277 5030 4227 4639 4962 4520 3808 3379 4603 4542 4810 4755 3837 6496 6676 5075 ]
G [ 5028 5123 4865 4806 4605 4722 4741 5604 4227 6296 7424 6495 5403 3732 3857 4245 4841 6456 10206 1263 14311 1117 176 887 190 94 624 7314 10957 1103 19357 15076 2451 4368 6620 5248 4753 5294 5612 6128 6883 7898 5016 3557 4143 4246 6167 5170 3797 4774 ]
T [ 5230 5269 5233 5386 5756 5413 5189 4287 6342 5266 4496 4619 5132 4575 5880 3577 7053 3026 1954 7916 3229 600 401 1373 7854 361 16102 3467 1452 13071 520 2127 5452 4648 3018 4631 5305 5179 4996 4960 4275 4007 4636 3924 4970 6957 5433 3941 4081 4538 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.03 -0.04 0.04 -0.02 -0.07 -0.03 0.01 -0.05 0.03 -0.09 -0.05 -0.04 0.07 -0.06 -0.03 -0.08 -0.04 -0.02 -0.01 0.03 0.01 0.01 0.00 0.00 ]
C [ 0.02 0.05 0.00 0.03 0.04 -0.00 0.06 0.15 -0.03 0.15 0.20 0.12 0.14 0.21 0.04 -0.02 0.07 0.10 -0.02 -0.02 0.07 0.05 0.01 0.03 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.04 0.05 0.08 -0.01 0.15 -0.02 -0.04 0.01 -0.06 -0.02 0.01 0.07 0.14 -0.02 0.20 0.14 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ 0.00 -0.00 0.02 -0.02 0.03 -0.02 -0.02 0.03 -0.02 -0.06 -0.05 -0.08 0.06 -0.05 0.10 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.03 0.00 0.01 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1202

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 498

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 480

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 418

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 341

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 282

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages