Detailed information of deep learning profile BP000310.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in body of pancreas using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000310.1
Cell line/tissue: body of pancreas
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR572DUJ
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.02 0.06 -0.00 0.12 0.19 0.06 0.08 0.20 0.00 -0.00 0.02 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.10 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.21 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.09 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 4839 4665 4878 5924 5567 5239 5165 5367 4374 5443 5448 4164 4448 3949 6289 7476 2373 8806 2218 1101 1936 1743 238 7628 167 122 1097 8205 601 2706 113 1363 3852 5062 8351 5715 6614 5464 4937 4801 5781 5415 6509 9303 7043 4306 5078 4878 5990 6254 ]
C [ 5368 5404 5602 4607 4415 5183 5574 5328 5380 3189 2888 4882 5444 8596 4429 5380 5760 2112 6230 9544 857 17456 20141 11487 12156 20392 1556 1355 7100 2618 123 1183 8888 6982 2988 5085 4004 4412 4686 4383 3499 3149 4538 4339 4678 4801 3635 6700 7104 5085 ]
G [ 5149 5155 4829 4609 4465 4554 4644 5580 4078 6522 7938 6820 5528 3592 3694 4010 4961 6836 10179 1278 14772 1054 97 605 146 53 437 7982 11883 806 20162 16274 2093 4071 6475 5137 4541 5244 5828 6420 7135 8285 4886 3187 3776 4105 6211 5174 3433 4714 ]
T [ 5418 5550 5465 5634 6327 5798 5391 4499 6942 5620 4500 4908 5354 4637 6362 3908 7680 3020 2147 8851 3209 521 298 1054 8305 207 17684 3232 1190 14644 376 1954 5941 4659 2960 4837 5615 5654 5323 5170 4359 3925 4841 3945 5277 7562 5850 4022 4247 4721 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.05 0.03 -0.02 -0.08 -0.03 0.00 -0.05 0.02 -0.09 -0.05 -0.05 0.07 -0.07 -0.04 -0.10 -0.04 -0.02 -0.01 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.00 0.06 0.14 -0.03 0.14 0.20 0.12 0.15 0.20 0.03 -0.01 0.07 0.10 -0.02 -0.03 0.07 0.05 -0.00 0.02 0.01 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.05 0.07 -0.02 0.14 -0.03 -0.04 0.01 -0.07 -0.01 0.01 0.06 0.14 -0.03 0.21 0.14 -0.02 0.04 0.07 0.03 0.01 0.02 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.03 -0.03 0.02 -0.02 -0.06 -0.06 -0.08 0.05 -0.07 0.10 -0.03 -0.04 0.04 -0.04 -0.01 0.03 -0.02 -0.03 -0.01 0.00 0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 571

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 480

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 108

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages