Detailed information of deep learning profile BP000309.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000309.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR568IVD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.07 0.16 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.08 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.01 -0.00 -0.00 ]

Frequency matrix

       
A [ 4283 4149 4238 5047 4877 4530 4528 4591 3826 4668 4651 3693 3885 3428 5501 6524 2238 7740 2096 1124 1778 1609 302 6176 197 132 1043 7082 597 2670 192 1266 3349 4486 6890 4888 5599 4815 4437 4279 4826 4559 5541 7910 5856 3722 4272 4203 5320 5447 ]
C [ 4895 4887 5035 4361 4152 4741 4957 4940 4833 3110 2907 4593 4875 7616 4078 4862 5291 2046 5354 8738 944 15203 17617 10366 11132 18029 1639 1442 6431 2778 211 1232 7844 5940 2824 4562 3802 4106 4272 4037 3301 2976 4125 4023 4397 4394 3405 6173 6254 4556 ]
G [ 4639 4719 4464 4249 4160 4265 4257 5028 3869 5834 6942 5970 4966 3409 3503 3765 4430 5889 9075 1271 12832 1039 180 755 162 69 470 7029 10201 890 17482 14129 2051 3960 6055 4768 4316 4762 5174 5733 6427 7417 4483 3020 3637 3777 5693 4633 3320 4382 ]
T [ 4654 4716 4734 4814 5282 4935 4729 3912 5943 4859 3971 4215 4745 4018 5389 3320 6512 2796 1946 7338 2917 620 372 1174 6980 241 15319 2918 1242 12133 586 1844 5227 4085 2702 4253 4754 4788 4588 4422 3917 3519 4322 3518 4581 6578 5101 3462 3577 4086 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.02 -0.07 -0.04 -0.04 0.06 -0.05 -0.03 -0.07 -0.03 -0.02 -0.00 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.01 0.03 0.00 0.02 0.02 -0.01 0.04 0.12 -0.02 0.12 0.16 0.09 0.12 0.16 0.02 -0.02 0.04 0.07 -0.03 -0.03 0.05 0.03 -0.00 0.02 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.04 0.06 -0.03 0.11 -0.03 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.11 -0.03 0.17 0.11 -0.02 0.04 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.05 -0.06 0.05 -0.05 0.09 -0.02 -0.03 0.04 -0.03 -0.01 0.02 -0.02 -0.02 -0.00 0.00 0.01 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 131

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages