Detailed information of deep learning profile BP000309.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in Peyer's patch using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000309.1
Cell line/tissue: Peyer's patch
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR568IVD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.08 0.16 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.07 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4086 3577 3462 5101 6578 4581 3518 4322 3519 3917 4422 4588 4788 4754 4253 2702 4085 5227 1844 586 12133 1242 2918 15319 241 6980 1174 372 620 2917 7338 1946 2796 6512 3320 5389 4018 4745 4215 3971 4859 5943 3912 4729 4935 5282 4814 4734 4716 4654 ]
C [ 4382 3320 4633 5693 3777 3637 3020 4483 7417 6427 5733 5174 4762 4316 4768 6055 3960 2051 14129 17482 890 10201 7029 470 69 162 755 180 1039 12832 1271 9075 5889 4430 3765 3503 3409 4966 5970 6942 5834 3869 5028 4257 4265 4160 4249 4464 4719 4639 ]
G [ 4556 6254 6173 3405 4394 4397 4023 4125 2976 3301 4037 4272 4106 3802 4562 2824 5940 7844 1232 211 2778 6431 1442 1639 18029 11132 10366 17617 15203 944 8738 5354 2046 5291 4862 4078 7616 4875 4593 2907 3110 4833 4940 4957 4741 4152 4361 5035 4887 4895 ]
T [ 5447 5320 4203 4272 3722 5856 7910 5541 4559 4826 4279 4437 4815 5599 4888 6890 4486 3349 1266 192 2670 597 7082 1043 132 197 6176 302 1609 1778 1124 2096 7740 2238 6524 5501 3428 3885 3693 4651 4668 3826 4591 4528 4530 4877 5047 4238 4149 4283 ]

Hypothetical CWM

   
A [ 0.00 0.01 0.00 -0.00 -0.02 -0.02 0.02 -0.01 -0.03 0.04 -0.03 -0.02 0.09 -0.05 0.05 -0.06 -0.05 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.04 -0.02 0.11 0.17 -0.03 0.11 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.03 0.11 -0.03 0.06 0.04 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.02 -0.00 0.03 0.05 -0.03 -0.03 0.07 0.04 -0.02 0.02 0.16 0.12 0.09 0.16 0.12 -0.02 0.12 0.04 -0.01 0.02 0.02 0.00 0.03 0.01 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.00 -0.02 -0.03 -0.07 -0.03 -0.05 0.06 -0.04 -0.04 -0.07 0.02 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 507

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 131

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages