Detailed information of deep learning profile BP000308.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000308.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR565HBN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.06 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.07 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.14 0.09 -0.00 0.04 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4097 3606 3423 5032 6541 4517 3448 4215 3417 3764 4396 4633 4691 4772 4194 2618 4084 5027 1732 403 12350 1093 2916 15099 263 7086 1110 411 645 2949 7299 1961 2720 6434 3355 5388 4007 4578 4242 3937 4761 5962 3868 4692 4893 5315 4828 4687 4746 4711 ]
C [ 4345 3262 4587 5608 3754 3522 2969 4409 7354 6353 5668 5025 4769 4123 4638 5892 3784 2028 14120 17612 889 10344 7005 498 81 194 764 240 1159 12495 1343 8925 5879 4428 3723 3393 3324 4909 5977 6875 5720 3790 5035 4204 4084 4095 4196 4364 4629 4597 ]
G [ 4550 6206 6136 3317 4251 4383 3918 4132 2897 3266 4013 4198 4092 3734 4445 2771 6047 7792 1201 143 2515 6299 1300 1621 17811 10761 10148 17247 14839 978 8525 5370 1973 5199 4862 4048 7579 4900 4356 2798 3019 4742 4797 4952 4719 4103 4148 4970 4791 4752 ]
T [ 5285 5203 4131 4320 3731 5855 7942 5521 4609 4894 4200 4421 4725 5648 5000 6996 4362 3430 1224 119 2523 541 7056 1059 122 236 6255 379 1634 1855 1110 2021 7705 2216 6337 5448 3367 3890 3702 4667 4777 3783 4577 4429 4581 4764 5105 4256 4111 4217 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.02 0.02 -0.00 -0.02 0.04 -0.02 -0.01 0.09 -0.05 0.05 -0.05 -0.04 -0.04 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.10 0.16 -0.04 0.10 0.05 -0.01 -0.02 -0.06 -0.00 -0.04 -0.03 0.10 -0.02 0.05 0.03 0.02 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.03 0.05 -0.02 -0.03 0.07 0.05 -0.02 0.02 0.15 0.11 0.09 0.15 0.10 -0.02 0.10 0.04 -0.01 0.03 0.02 0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.06 -0.03 -0.03 -0.06 0.03 -0.03 0.01 -0.02 -0.05 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 76

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages