Detailed information of deep learning profile BP000308.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000308.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR565HBN
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.04 -0.00 0.09 0.14 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.07 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.06 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.00 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4217 4111 4256 5105 4764 4581 4429 4577 3783 4777 4667 3702 3890 3367 5448 6337 2216 7705 2021 1110 1855 1634 379 6255 236 122 1059 7056 541 2523 119 1224 3430 4362 6996 5000 5648 4725 4421 4200 4894 4609 5521 7942 5855 3731 4320 4131 5203 5285 ]
C [ 4752 4791 4970 4148 4103 4719 4952 4797 4742 3019 2798 4356 4900 7579 4048 4862 5199 1973 5370 8525 978 14839 17247 10148 10761 17811 1621 1300 6299 2515 143 1201 7792 6047 2771 4445 3734 4092 4198 4013 3266 2897 4132 3918 4383 4251 3317 6136 6206 4550 ]
G [ 4597 4629 4364 4196 4095 4084 4204 5035 3790 5720 6875 5977 4909 3324 3393 3723 4428 5879 8925 1343 12495 1159 240 764 194 81 498 7005 10344 889 17612 14120 2028 3784 5892 4638 4123 4769 5025 5668 6353 7354 4409 2969 3522 3754 5608 4587 3262 4345 ]
T [ 4711 4746 4687 4828 5315 4893 4692 3868 5962 4761 3937 4242 4578 4007 5388 3355 6434 2720 1961 7299 2949 645 411 1110 7086 263 15099 2916 1093 12350 403 1732 5027 4084 2618 4194 4772 4691 4633 4396 3764 3417 4215 3448 4517 6541 5032 3423 3606 4097 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.05 -0.02 0.01 -0.03 0.03 -0.06 -0.03 -0.03 0.06 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.04 0.00 0.02 0.03 -0.01 0.04 0.10 -0.02 0.10 0.15 0.09 0.11 0.15 0.02 -0.02 0.05 0.07 -0.03 -0.02 0.05 0.03 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.02 0.03 0.05 -0.02 0.10 -0.03 -0.04 -0.00 -0.06 -0.02 -0.01 0.05 0.10 -0.04 0.16 0.10 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.04 -0.04 -0.05 0.05 -0.05 0.09 -0.01 -0.02 0.04 -0.02 -0.00 0.02 -0.02 -0.02 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 248

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 175

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 164

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 76

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages