Detailed information of deep learning profile BP000307.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000307.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR560BUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.15 -0.00 0.05 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.07 0.04 0.16 0.11 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.01 ]

Frequency matrix

       
A [ 3556 4656 5557 4404 3583 4030 3486 3807 4207 4253 4267 4402 4040 3045 4099 4660 2272 1206 9693 1876 3045 12993 402 5824 1847 374 432 2907 6741 1825 2813 5867 3064 4829 3741 4577 4019 4008 4423 5107 3913 4407 4564 4631 4499 4556 4385 4497 4532 4387 ]
C [ 4382 5033 3940 3816 3282 4315 6259 5552 5060 4813 4482 4274 4676 5590 3938 2439 11928 15226 1542 7950 6436 557 137 211 672 106 616 12119 1216 8562 5562 4021 3765 3518 3435 4540 5089 5975 5116 3909 4450 4201 4059 4173 4299 4159 4297 4304 4166 4254 ]
G [ 5388 3552 4086 3978 3990 3994 3151 3524 3971 4096 4158 3640 4240 3022 5104 6860 1678 508 2657 6676 1918 2177 16542 11086 8513 16587 14952 648 8149 4875 1813 5063 4449 3795 6779 4464 4628 3153 3448 4448 4677 4509 4517 4239 4158 4539 4730 4481 4410 4556 ]
T [ 4045 4130 3788 5173 6516 5032 4475 4488 4133 4209 4464 5055 4415 5714 4230 3412 1493 431 3479 869 5972 1644 290 250 6339 304 1371 1697 1265 2109 7183 2420 6093 5229 3416 3790 3635 4235 4384 3907 4331 4254 4231 4328 4415 4117 3959 4089 4263 4174 ]

Hypothetical CWM

   
A [ 0.01 -0.00 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.09 -0.04 0.04 -0.05 -0.05 -0.05 -0.02 0.02 -0.03 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.00 0.02 0.04 0.03 -0.02 0.10 0.17 -0.02 0.10 0.05 -0.01 -0.03 -0.07 -0.00 -0.05 -0.03 0.13 -0.03 0.07 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.01 -0.00 0.03 0.05 -0.03 -0.03 0.06 0.05 -0.02 0.03 0.17 0.13 0.09 0.17 0.13 -0.03 0.12 0.04 -0.02 0.03 0.02 -0.00 0.03 0.01 ]
T [ 0.01 0.01 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.05 0.05 -0.02 -0.04 -0.07 0.03 -0.04 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.03 0.01 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2970

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages