Detailed information of deep learning profile BP000307.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in MCF-7 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000307.1
Cell line/tissue: MCF-7
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR560BUE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.11 0.16 0.04 0.07 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 0.05 -0.00 0.15 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4174 4263 4089 3959 4117 4415 4328 4231 4254 4331 3907 4384 4235 3635 3790 3416 5229 6093 2420 7183 2109 1265 1697 1371 304 6339 250 290 1644 5972 869 3479 431 1493 3412 4230 5714 4415 5055 4464 4209 4133 4488 4475 5032 6516 5173 3788 4130 4045 ]
C [ 4556 4410 4481 4730 4539 4158 4239 4517 4509 4677 4448 3448 3153 4628 4464 6779 3795 4449 5063 1813 4875 8149 648 14952 16587 8513 11086 16542 2177 1918 6676 2657 508 1678 6860 5104 3022 4240 3640 4158 4096 3971 3524 3151 3994 3990 3978 4086 3552 5388 ]
G [ 4254 4166 4304 4297 4159 4299 4173 4059 4201 4450 3909 5116 5975 5089 4540 3435 3518 3765 4021 5562 8562 1216 12119 616 106 672 211 137 557 6436 7950 1542 15226 11928 2439 3938 5590 4676 4274 4482 4813 5060 5552 6259 4315 3282 3816 3940 5033 4382 ]
T [ 4387 4532 4497 4385 4556 4499 4631 4564 4407 3913 5107 4423 4008 4019 4577 3741 4829 3064 5867 2813 1825 6741 2907 432 374 1847 5824 402 12993 3045 1876 9693 1206 2272 4660 4099 3045 4040 4402 4267 4253 4207 3807 3486 4030 3583 4404 5557 4656 3556 ]

Hypothetical CWM

   
A [ -0.00 -0.01 0.01 0.03 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.04 0.03 -0.07 -0.04 -0.02 0.05 -0.05 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.01 0.01 ]
C [ 0.01 0.03 -0.00 0.02 0.03 -0.02 0.04 0.12 -0.03 0.13 0.17 0.09 0.13 0.17 0.03 -0.02 0.05 0.06 -0.03 -0.03 0.05 0.03 -0.00 0.01 0.01 ]
G [ 0.02 0.01 0.01 0.01 0.03 0.04 0.07 -0.03 0.13 -0.03 -0.05 -0.00 -0.07 -0.03 -0.01 0.05 0.10 -0.02 0.17 0.10 -0.02 0.03 0.04 0.02 0.00 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.03 0.02 -0.02 -0.05 -0.05 -0.05 0.04 -0.04 0.09 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.00 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 2970

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 29

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages