Detailed information of deep learning profile BP000306.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000306.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR559KAB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 -0.00 0.09 0.16 -0.00 0.06 0.01 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.06 -0.00 0.02 0.01 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.15 0.06 0.04 0.13 0.08 0.00 0.04 0.01 -0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]

Frequency matrix

       
A [ 4247 3696 3436 5214 7104 4862 3457 4493 3405 3931 4669 5052 5004 5108 4259 2582 4149 5314 1674 345 12595 1028 2972 15818 322 6960 1537 674 1117 3327 7291 2490 3042 6606 3725 5581 4308 4787 4588 4125 4950 6114 4208 4792 5127 5452 5053 4916 5002 4905 ]
C [ 4838 3486 4980 6548 4118 3934 3160 4724 8676 7211 6363 5498 5220 4576 5231 6856 4315 2130 15661 19090 922 11611 7715 727 158 418 1385 653 1808 12565 1986 8675 6225 4775 4103 3902 3744 5454 6340 7229 6116 4239 5398 4739 4671 4526 4647 4766 4984 5030 ]
G [ 4984 6740 6919 3455 4599 4780 4206 4407 2892 3343 4264 4569 4354 3920 4982 2821 6673 8564 1216 92 3497 6470 1569 1952 18979 11906 10587 17744 14889 1659 8836 6080 2900 5709 5389 4615 7836 5410 4802 3346 3599 5305 5185 5369 4982 4510 4605 5501 5281 5238 ]
T [ 5561 5708 4295 4413 3809 6054 8807 6006 4657 5145 4334 4511 5052 6026 5158 7371 4493 3622 1079 103 2616 521 7374 1133 171 346 6121 559 1816 2079 1517 2385 7463 2540 6413 5532 3742 3979 3900 4930 4965 3972 4839 4730 4850 5142 5325 4447 4363 4457 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.01 -0.01 -0.02 -0.01 0.02 -0.01 -0.03 0.04 -0.02 -0.02 0.08 -0.05 0.04 -0.05 -0.04 -0.04 -0.01 0.01 -0.02 -0.01 0.02 -0.02 0.01 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.11 0.16 -0.03 0.10 0.04 -0.00 -0.01 -0.05 0.01 -0.03 -0.03 0.09 -0.02 0.04 0.03 0.02 0.01 0.00 ]
G [ 0.01 0.01 0.00 0.01 -0.01 0.03 0.05 -0.03 -0.02 0.07 0.05 -0.02 0.02 0.15 0.11 0.08 0.14 0.10 -0.02 0.09 0.03 -0.01 0.02 0.02 0.00 ]
T [ 0.00 0.01 0.01 0.01 0.02 -0.01 -0.01 -0.03 -0.07 -0.02 -0.06 0.05 -0.03 -0.04 -0.06 0.01 -0.04 0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 311

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 37

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages