Detailed information of deep learning profile BP000306.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in esophagus muscularis mucosa using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000306.1
Cell line/tissue: esophagus muscularis mucosa
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR559KAB
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.00 ]
C [ 0.00 -0.00 0.01 0.04 0.00 0.08 0.13 0.04 0.06 0.15 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.01 0.02 -0.00 0.06 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.01 0.06 -0.00 0.16 0.09 -0.00 0.00 0.01 0.00 ]
T [ 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.07 -0.00 -0.00 0.03 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4457 4363 4447 5325 5142 4850 4730 4839 3972 4965 4930 3900 3979 3742 5532 6413 2540 7463 2385 1517 2079 1816 559 6121 346 171 1133 7374 521 2616 103 1079 3622 4493 7371 5158 6026 5052 4511 4334 5145 4657 6006 8807 6054 3809 4413 4295 5708 5561 ]
C [ 5238 5281 5501 4605 4510 4982 5369 5185 5305 3599 3346 4802 5410 7836 4615 5389 5709 2900 6080 8836 1659 14889 17744 10587 11906 18979 1952 1569 6470 3497 92 1216 8564 6673 2821 4982 3920 4354 4569 4264 3343 2892 4407 4206 4780 4599 3455 6919 6740 4984 ]
G [ 5030 4984 4766 4647 4526 4671 4739 5398 4239 6116 7229 6340 5454 3744 3902 4103 4775 6225 8675 1986 12565 1808 653 1385 418 158 727 7715 11611 922 19090 15661 2130 4315 6856 5231 4576 5220 5498 6363 7211 8676 4724 3160 3934 4118 6548 4980 3486 4838 ]
T [ 4905 5002 4916 5053 5452 5127 4792 4208 6114 4950 4125 4588 4787 4308 5581 3725 6606 3042 2490 7291 3327 1117 674 1537 6960 322 15818 2972 1028 12595 345 1674 5314 4149 2582 4259 5108 5004 5052 4669 3931 3405 4493 3457 4862 7104 5214 3436 3696 4247 ]

Hypothetical CWM

   
A [ 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 0.00 -0.04 0.01 -0.06 -0.04 -0.03 0.05 -0.06 -0.02 -0.07 -0.03 -0.01 -0.01 0.02 0.01 0.01 0.01 0.00 ]
C [ 0.00 0.02 0.02 -0.01 0.03 0.09 -0.02 0.10 0.14 0.08 0.11 0.15 0.02 -0.02 0.05 0.07 -0.02 -0.03 0.05 0.03 -0.01 0.01 0.00 0.01 0.01 ]
G [ 0.00 0.01 0.02 0.03 0.04 -0.02 0.09 -0.03 -0.03 0.01 -0.05 -0.01 -0.00 0.04 0.10 -0.03 0.16 0.11 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.04 -0.04 -0.05 0.04 -0.05 0.08 -0.02 -0.02 0.04 -0.03 -0.01 0.02 -0.01 -0.02 -0.01 0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 1108

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 311

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 280

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_5

Num. of seqlets: 37

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages