Detailed information of deep learning profile BP000305.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in transverse colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000305.1
Cell line/tissue: transverse colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR558HTE
Model: BPNet
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Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.10 -0.00 0.04 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.00 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.01 0.00 -0.00 -0.00 0.10 0.04 0.03 0.10 0.06 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.00 ]

Frequency matrix

       
A [ 2011 1683 1547 2613 3775 2467 1606 2137 1580 1812 2434 2521 2611 2656 2317 1176 1974 2767 902 191 7243 437 1432 9071 105 3725 550 174 422 1291 3943 972 1424 3670 1628 3195 2036 2371 2324 1974 2556 3486 1869 2551 2631 3043 2588 2314 2464 2447 ]
C [ 2869 1943 2901 3962 2329 2033 1603 2666 5035 4350 3708 3438 2968 2461 2613 3663 2179 1061 8500 10251 466 6484 4971 331 58 148 489 81 487 8068 493 5463 3840 2726 2354 2164 1861 3224 4042 4814 3952 2007 3276 2708 2713 2522 2667 2789 2868 3031 ]
G [ 2909 4065 4114 1814 2738 2765 2520 2573 1610 1799 2373 2537 2553 2248 2980 1454 4222 5092 643 77 1833 3428 810 718 10366 6610 5975 10209 8920 403 5753 3286 1305 3247 3245 2489 4917 3126 2413 1497 1606 3190 3111 3052 2821 2481 2549 3312 3148 2973 ]
T [ 2797 2895 2024 2197 1744 3321 4857 3210 2361 2625 2071 2090 2454 3221 2676 4293 2211 1666 541 67 1044 237 3373 466 57 103 3572 122 757 824 397 865 4017 943 3359 2738 1772 1865 1807 2301 2472 1903 2330 2275 2421 2540 2782 2171 2106 2135 ]

Hypothetical CWM

   
A [ -0.00 0.00 0.00 0.00 -0.02 -0.01 0.01 -0.00 -0.03 0.03 -0.03 -0.02 0.06 -0.04 0.03 -0.04 -0.03 -0.02 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 0.00 0.00 ]
C [ 0.01 0.01 0.01 0.01 0.03 0.01 -0.02 0.07 0.10 -0.03 0.06 0.03 -0.00 -0.01 -0.03 0.00 -0.03 -0.03 0.07 -0.03 0.03 0.02 0.01 0.00 -0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.01 0.02 0.04 -0.03 -0.02 0.05 0.03 -0.01 0.01 0.10 0.07 0.05 0.10 0.07 -0.03 0.07 0.02 -0.00 0.01 0.01 -0.00 0.02 0.00 ]
T [ 0.00 0.00 0.01 0.01 0.02 0.00 -0.01 -0.02 -0.04 -0.03 -0.04 0.03 -0.04 -0.04 -0.06 0.01 -0.03 -0.00 -0.01 -0.04 -0.01 0.02 -0.02 0.02 0.00 -0.01 -0.00 ]

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages