Detailed information of deep learning profile BP000304.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ascending aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000304.1
Cell line/tissue: ascending aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR555DCD
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.16 0.06 0.05 0.16 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4461 3961 3706 5438 7186 5053 3692 4544 3676 4114 4803 5117 5317 5283 4666 2804 4344 5522 1993 546 13248 1252 3208 16560 295 7793 1210 370 578 2991 8020 1980 2810 7226 3522 5944 4266 4972 4647 4147 5233 6565 4250 5046 5414 5904 5326 5033 5151 5169 ]
C [ 4799 3505 5002 6274 4099 3824 3184 4775 8137 7050 6325 5668 5076 4508 4997 6426 4148 2178 15355 19085 1098 11420 7617 604 79 198 794 182 1096 14345 1296 10040 6533 4873 4046 3723 3556 5461 6578 7767 6404 4105 5491 4611 4517 4350 4558 4885 5097 5023 ]
G [ 5046 6884 6771 3594 4689 4711 4342 4526 3125 3457 4329 4587 4407 4007 4989 3046 6781 8663 1395 212 3073 6749 1645 1739 19512 11826 11341 19209 16691 904 9614 5955 2135 5831 5284 4301 8515 5362 4886 3033 3202 5365 5261 5478 5099 4430 4537 5487 5328 5211 ]
T [ 5728 5684 4555 4728 4060 6446 8816 6189 5096 5413 4577 4662 5234 6236 5382 7758 4761 3671 1291 191 2615 613 7564 1131 148 217 6689 273 1669 1794 1104 2059 8556 2104 7182 6066 3697 4239 3923 5087 5195 3999 5032 4899 5004 5350 5613 4629 4458 4631 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.00 -0.02 -0.02 0.01 -0.01 -0.04 0.03 -0.03 -0.02 0.08 -0.05 0.04 -0.06 -0.05 -0.05 -0.02 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.02 0.01 0.02 0.05 0.04 -0.01 0.11 0.17 -0.03 0.10 0.05 -0.00 -0.02 -0.06 0.01 -0.03 -0.03 0.12 -0.03 0.06 0.04 0.03 0.01 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.01 0.02 -0.00 0.04 0.06 -0.02 -0.02 0.07 0.05 -0.01 0.02 0.16 0.12 0.09 0.16 0.12 -0.03 0.12 0.04 -0.01 0.03 0.02 0.00 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.01 -0.02 -0.04 -0.07 -0.03 -0.05 0.05 -0.04 -0.05 -0.08 0.02 -0.05 0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 191

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 69

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages