Detailed information of deep learning profile BP000303.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in A549 using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000303.1
Cell line/tissue: A549
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR553UWG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.01 -0.00 -0.00 0.03 -0.00 -0.00 0.07 -0.00 0.02 -0.01 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 ]
C [ 0.00 0.01 0.00 0.00 0.11 0.18 0.00 0.07 0.01 -0.00 0.00 0.00 0.00 0.00 0.01 0.10 0.01 0.04 0.01 0.01 ]
G [ 0.00 -0.00 0.02 0.02 0.00 -0.00 0.01 0.01 -0.00 0.01 0.19 0.07 0.07 0.19 0.10 0.00 0.06 0.02 0.00 0.01 ]
T [ -0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.00 0.01 -0.00 -0.00 -0.01 -0.00 0.00 0.02 -0.00 ]

Frequency matrix

       
A [ 27 25 35 31 31 24 33 28 35 29 23 25 25 38 21 14 11 2 8 57 47 9 27 23 15 25 24 23 29 29 26 21 29 30 14 10 79 14 21 86 6 47 12 4 8 20 54 15 18 48 ]
C [ 27 27 23 27 35 30 25 28 22 33 32 27 24 20 22 50 6 5 73 16 20 24 8 39 67 33 29 37 26 27 33 36 15 16 91 101 7 67 40 2 3 3 0 3 13 68 8 51 29 22 ]
G [ 31 33 32 24 16 25 32 30 28 26 27 34 33 33 53 23 7 105 4 14 33 3 19 28 11 21 41 29 25 18 17 6 44 54 3 2 17 30 8 22 107 63 66 109 80 12 50 34 11 36 ]
T [ 32 32 27 35 35 38 27 31 32 29 35 31 35 26 21 30 93 5 32 30 17 81 63 27 24 38 23 28 37 43 41 54 29 17 9 4 14 6 48 7 1 4 39 1 16 17 5 17 59 11 ]

Hypothetical CWM

   
A [ 0.02 -0.02 -0.01 -0.00 -0.02 -0.01 -0.00 0.00 0.00 0.00 -0.00 -0.03 -0.02 0.02 -0.02 -0.04 0.04 -0.03 -0.02 0.10 -0.05 0.04 -0.07 -0.04 -0.06 -0.02 0.02 -0.03 -0.03 0.03 ]
C [ -0.01 -0.02 -0.03 0.02 0.06 0.04 0.03 0.03 0.01 0.01 0.02 0.05 0.04 -0.00 0.14 0.20 -0.01 0.13 0.05 -0.01 -0.01 -0.05 -0.00 -0.03 -0.01 0.15 -0.00 0.09 0.05 0.04 ]
G [ 0.02 -0.01 0.00 -0.01 -0.02 -0.00 0.01 0.00 0.02 0.01 0.02 0.01 0.05 0.06 -0.02 -0.02 0.08 0.06 -0.01 0.04 0.20 0.14 0.13 0.20 0.14 -0.01 0.14 0.05 -0.01 0.04 ]
T [ -0.02 0.03 0.03 0.00 0.00 -0.00 -0.00 -0.00 0.00 0.01 0.01 0.02 -0.01 -0.03 -0.04 -0.07 -0.03 -0.05 0.06 -0.04 -0.04 -0.07 0.03 -0.04 0.00 -0.03 -0.07 -0.02 0.03 -0.05 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_0

Num. of seqlets: 18496

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 308

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 153

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 141

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000171.1 CTCF ENCSR194JAU middle frontal area 46 Homo sapiens MA0139.2
BP000172.1 CTCF ENCSR194WQV nephron Homo sapiens MA0139.2
BP000173.1 CTCF ENCSR195POA lower lobe of left lung Homo sapiens MA0139.2
BP000174.1 CTCF ENCSR196HOM epithelial cell of prostate Homo sapiens MA0139.2
BP000175.1 CTCF ENCSR203QEB Panc1 Homo sapiens MA0139.2
BP000176.1 CTCF ENCSR206ETG gastroesophageal sphincter Homo sapiens MA0139.2
BP000177.1 CTCF ENCSR211AFA middle frontal area 46 Homo sapiens MA0139.2
BP000178.1 CTCF ENCSR216SIK HCT116 Homo sapiens MA0139.2
BP000179.1 CTCF ENCSR218MVT neural crest cell Homo sapiens MA0139.2
BP000180.1 CTCF ENCSR222SQE sigmoid colon Homo sapiens MA0139.2
Showing 10 profiles of page 18 from 45 pages