Detailed information of deep learning profile BP000180.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in sigmoid colon using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000180.1
Cell line/tissue: sigmoid colon
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR222SQE
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.03 -0.00 0.06 0.09 0.03 0.04 0.10 0.00 -0.00 0.01 0.00 -0.00 -0.00 0.01 0.01 -0.00 -0.00 ]
G [ -0.00 0.00 0.01 0.01 -0.00 0.05 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.04 -0.00 0.10 0.05 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.05 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4138 3981 4067 5087 4866 4549 4453 4598 3688 4818 4617 3574 3790 3300 5300 6325 1998 7397 1825 1036 1701 1573 325 6421 169 120 812 6955 459 2174 119 1101 3218 4263 7361 4914 5728 4694 4236 3970 4932 4478 5640 8433 6031 3523 4170 4057 5288 5323 ]
C [ 4609 4693 5032 3926 3865 4552 4817 4657 4801 2632 2451 4064 4705 7533 3912 4806 5073 2027 5540 8294 887 14873 17001 9842 10456 17478 1395 1125 5930 2470 108 976 7754 6202 2368 4287 3482 3869 3968 3819 2880 2472 3922 3675 4237 4117 2887 6262 6286 4444 ]
G [ 4513 4475 4274 3943 3828 3955 4128 4996 3414 5784 7111 6026 4923 3145 3278 3512 4282 5972 8624 1160 12520 891 226 644 142 78 383 7057 10594 681 17299 14216 1794 3514 5754 4509 3847 4572 5012 5719 6408 7726 4275 2647 3164 3537 5789 4520 2931 4178 ]
T [ 4674 4785 4561 4978 5375 4878 4536 3683 6031 4700 3755 4270 4516 3956 5444 3291 6581 2538 1945 7444 2826 597 382 1027 7167 258 15344 2797 951 12609 408 1641 5168 3955 2451 4224 4877 4799 4718 4426 3714 3258 4097 3179 4502 6757 5088 3095 3429 3989 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.02 0.02 -0.01 -0.03 -0.01 0.00 -0.02 0.01 -0.04 -0.03 -0.03 0.03 -0.04 -0.02 -0.04 -0.02 -0.01 -0.00 0.01 0.01 0.01 0.00 -0.00 ]
C [ 0.00 0.02 -0.00 0.01 0.01 -0.01 0.02 0.06 -0.02 0.06 0.09 0.05 0.07 0.10 0.01 -0.01 0.03 0.05 -0.02 -0.02 0.03 0.02 -0.00 0.00 0.00 0.01 0.00 ]
G [ 0.01 -0.00 0.00 0.00 0.01 0.02 0.03 -0.01 0.07 -0.02 -0.02 -0.00 -0.04 -0.02 -0.00 0.03 0.06 -0.02 0.10 0.07 -0.01 0.02 0.03 0.01 0.00 0.01 0.01 ]
T [ 0.00 -0.00 0.01 -0.01 0.02 -0.01 -0.01 0.01 -0.01 -0.02 -0.02 -0.03 0.03 -0.02 0.06 -0.01 -0.01 0.03 -0.02 -0.00 0.02 -0.01 -0.01 0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 270

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_6

Num. of seqlets: 30

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages