Detailed information of deep learning profile BP000302.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in stomach using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000302.1
Cell line/tissue: stomach
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR549WAU
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.06 0.12 -0.00 0.04 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ -0.00 -0.00 0.01 0.01 -0.00 -0.00 0.00 0.01 -0.00 0.00 0.11 0.05 0.03 0.10 0.07 -0.00 0.03 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3730 3304 3043 4898 6465 4356 3060 4065 3156 3579 4307 4529 4650 4814 4075 2358 3704 5122 1613 332 12512 859 2788 14984 205 6929 1012 382 602 2753 7387 1906 2547 6322 3227 5364 3855 4318 4151 3620 4649 5928 3612 4462 4821 5345 4740 4477 4627 4601 ]
C [ 4175 2878 4464 5664 3509 3103 2651 4166 7529 6350 5605 4967 4558 3858 4397 5657 3517 1811 14002 17046 599 10313 7017 411 88 203 638 240 938 12195 1125 8405 5836 4278 3479 3213 3084 4889 5831 6995 5696 3348 4849 4043 3963 3790 3962 4258 4444 4465 ]
G [ 4408 6292 6190 2948 4224 4205 3696 3871 2541 2932 3734 4018 3848 3433 4325 2338 6139 7476 965 90 2339 5943 1116 1342 17165 10243 9431 16633 14606 909 8099 5500 2062 5004 4711 3865 7319 4747 4064 2518 2607 4746 4774 4802 4458 3829 3914 4939 4645 4549 ]
T [ 5273 5112 3889 4076 3388 5922 8179 5484 4360 4725 3940 4072 4530 5481 4789 7233 4226 3177 1006 118 2136 471 6665 849 128 211 6505 331 1440 1729 975 1775 7141 1982 6169 5144 3328 3632 3540 4453 4634 3564 4351 4279 4344 4622 4970 3912 3870 3971 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 0.00 -0.02 -0.01 0.02 -0.00 -0.01 0.03 -0.02 -0.01 0.07 -0.03 0.03 -0.04 -0.03 -0.03 -0.01 0.02 -0.01 -0.01 0.02 -0.01 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.03 0.02 -0.01 0.08 0.12 -0.03 0.08 0.03 -0.00 -0.02 -0.04 0.00 -0.02 -0.02 0.08 -0.02 0.04 0.02 0.01 0.00 0.00 -0.00 0.01 ]
G [ 0.00 0.01 0.00 0.01 -0.00 0.03 0.04 -0.02 -0.02 0.06 0.04 -0.01 0.02 0.11 0.09 0.06 0.11 0.08 -0.03 0.08 0.03 -0.01 0.02 0.01 -0.00 0.02 0.01 ]
T [ 0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.02 -0.05 -0.02 -0.04 0.04 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.01 -0.04 -0.01 0.02 -0.02 0.02 0.00 -0.01 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 299

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 250

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 179

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages