Detailed information of deep learning profile BP000301.1

  1. Home
  2. Deep Learning Profile > BP000301.1
This page shows detailed deep learning-derived predictions and motifs for CTCF in thoracic aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000301.1
Cell line/tissue: thoracic aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR549TXG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.01 0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.12 0.18 0.05 0.07 0.19 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.09 -0.00 0.00 0.00 -0.00 -0.00 -0.00 0.02 0.07 -0.00 0.20 0.11 -0.00 0.01 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.08 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.01 -0.01 -0.00 ]

Frequency matrix

       
A [ 3892 3754 3888 4640 4487 4195 4142 4301 3371 4365 4351 3317 3450 3186 4968 5884 1844 6971 1613 987 1550 1365 192 5889 176 115 863 6304 503 2278 96 1091 3103 4021 6535 4577 5240 4346 3928 3892 4583 4267 5072 7405 5434 3422 3952 3803 4739 4828 ]
C [ 4275 4269 4488 3747 3562 4078 4415 4132 4339 2638 2419 3911 4344 6828 3526 4404 4674 1779 5133 7533 551 14235 15983 8957 9325 16163 1333 1204 5951 2042 73 954 6909 5410 2411 3983 3217 3558 3699 3509 2807 2460 3681 3411 3839 3743 2885 5535 5616 4000 ]
G [ 4004 4094 3877 3692 3531 3675 3731 4529 3280 5137 6229 5340 4490 2844 3067 3218 3920 5350 7957 977 11880 512 94 670 168 61 430 6328 9121 680 16058 12838 1813 3411 5147 4064 3579 4100 4558 5136 5677 6667 3902 2586 3074 3348 5024 4088 2804 3930 ]
T [ 4338 4392 4256 4430 4929 4561 4221 3547 5519 4369 3510 3941 4225 3651 4948 3003 6071 2409 1806 7012 2528 397 240 993 6840 170 13883 2673 934 11509 282 1626 4684 3667 2416 3885 4473 4505 4324 3972 3442 3115 3854 3107 4162 5996 4648 3083 3350 3751 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.02 -0.06 -0.03 -0.00 -0.06 0.02 -0.09 -0.05 -0.05 0.06 -0.06 -0.04 -0.08 -0.05 -0.02 -0.01 0.02 0.01 0.01 0.00 -0.00 ]
C [ 0.02 0.04 0.01 0.03 0.03 -0.00 0.05 0.13 -0.03 0.13 0.18 0.11 0.14 0.19 0.03 -0.02 0.06 0.09 -0.02 -0.03 0.06 0.05 0.00 0.02 0.02 0.02 0.01 ]
G [ 0.02 0.01 0.01 0.02 0.03 0.04 0.06 -0.02 0.13 -0.04 -0.03 0.01 -0.07 -0.02 -0.01 0.07 0.13 -0.04 0.20 0.13 -0.01 0.05 0.06 0.03 0.01 0.02 0.03 ]
T [ -0.00 -0.01 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.06 -0.07 0.05 -0.06 0.09 -0.02 -0.04 0.05 -0.05 -0.01 0.02 -0.02 -0.03 -0.01 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 324

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 297

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages