Detailed information of deep learning profile BP000301.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in thoracic aorta using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000301.1
Cell line/tissue: thoracic aorta
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR549TXG
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.01 -0.01 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.08 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.01 -0.00 0.11 0.20 -0.00 0.07 0.02 -0.00 -0.00 -0.00 0.00 0.00 -0.00 0.09 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.19 0.07 0.05 0.18 0.12 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ 0.00 0.01 -0.00 -0.01 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 3751 3350 3083 4648 5996 4162 3107 3854 3115 3442 3972 4324 4505 4473 3885 2416 3667 4684 1626 282 11509 934 2673 13883 170 6840 993 240 397 2528 7012 1806 2409 6071 3003 4948 3651 4225 3941 3510 4369 5519 3547 4221 4561 4929 4430 4256 4392 4338 ]
C [ 3930 2804 4088 5024 3348 3074 2586 3902 6667 5677 5136 4558 4100 3579 4064 5147 3411 1813 12838 16058 680 9121 6328 430 61 168 670 94 512 11880 977 7957 5350 3920 3218 3067 2844 4490 5340 6229 5137 3280 4529 3731 3675 3531 3692 3877 4094 4004 ]
G [ 4000 5616 5535 2885 3743 3839 3411 3681 2460 2807 3509 3699 3558 3217 3983 2411 5410 6909 954 73 2042 5951 1204 1333 16163 9325 8957 15983 14235 551 7533 5133 1779 4674 4404 3526 6828 4344 3911 2419 2638 4339 4132 4415 4078 3562 3747 4488 4269 4275 ]
T [ 4828 4739 3803 3952 3422 5434 7405 5072 4267 4583 3892 3928 4346 5240 4577 6535 4021 3103 1091 96 2278 503 6304 863 115 176 5889 192 1365 1550 987 1613 6971 1844 5884 4968 3186 3450 3317 4351 4365 3371 4301 4142 4195 4487 4640 3888 3754 3892 ]

Hypothetical CWM

   
A [ 0.00 0.00 0.00 -0.01 -0.03 -0.02 0.02 -0.01 -0.05 0.05 -0.04 -0.02 0.09 -0.06 0.05 -0.07 -0.06 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.01 -0.00 ]
C [ 0.03 0.02 0.01 0.03 0.06 0.05 -0.01 0.13 0.20 -0.04 0.13 0.07 -0.01 -0.02 -0.07 0.01 -0.03 -0.04 0.13 -0.02 0.06 0.04 0.03 0.02 0.01 0.01 0.02 ]
G [ 0.01 0.02 0.02 0.02 0.00 0.05 0.06 -0.03 -0.02 0.09 0.06 -0.02 0.03 0.19 0.14 0.11 0.18 0.13 -0.03 0.13 0.05 -0.00 0.03 0.03 0.01 0.04 0.02 ]
T [ -0.00 0.00 0.01 0.01 0.02 -0.01 -0.02 -0.05 -0.08 -0.04 -0.06 0.06 -0.05 -0.05 -0.09 0.02 -0.06 -0.00 -0.03 -0.06 -0.02 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 4239

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 324

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 297

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages