Detailed information of deep learning profile BP000300.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ovary using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000300.1
Cell line/tissue: ovary
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR548DDS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.02 -0.00 -0.00 0.06 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.07 0.13 -0.00 0.05 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.06 -0.00 0.02 0.01 0.00 -0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.12 0.05 0.03 0.12 0.08 -0.00 0.04 0.01 -0.00 0.00 0.00 ]
T [ 0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

       
A [ 4090 3572 3287 5309 7345 4882 3399 4404 3349 3869 4756 5108 5223 5346 4601 2454 4013 5513 1738 328 13939 875 3142 17132 220 7927 962 319 600 2860 7972 2014 2776 7229 3487 6044 4237 4668 4656 3821 4960 6933 3882 4966 5401 6125 5278 4812 5078 5048 ]
C [ 5094 3521 5316 6935 4117 3826 3115 4957 9096 7642 6875 6069 5510 4484 4903 6791 4053 2003 16259 19723 661 12330 8341 618 84 133 904 211 971 14753 1168 9928 7090 5132 4277 3987 3691 5998 7200 8705 7078 3831 6039 4911 4812 4440 4689 4971 5256 5360 ]
G [ 5292 7457 7455 3461 5007 4995 4455 4692 2983 3487 4411 4694 4550 4078 5392 2755 7717 9289 1097 88 3612 6518 1514 1590 19807 12006 11166 19415 17053 872 10097 6520 2478 5914 5747 4552 8799 5690 4612 2848 3059 5713 5557 5717 5058 4505 4549 6098 5723 5541 ]
T [ 5751 5677 4169 4522 3758 6524 9258 6174 4799 5229 4185 4356 4944 6319 5331 8227 4444 3422 1133 88 2015 504 7230 887 116 161 7195 282 1603 1742 990 1765 7883 1952 6716 5644 3500 3871 3759 4853 5130 3750 4749 4633 4956 5157 5711 4346 4170 4278 ]

Hypothetical CWM

   
A [ 0.00 0.00 -0.01 -0.01 0.02 -0.01 -0.02 0.03 -0.02 -0.01 0.06 -0.04 0.04 -0.04 -0.03 -0.03 -0.01 0.01 -0.02 -0.01 0.02 -0.02 0.01 -0.00 -0.00 ]
C [ 0.01 0.01 0.04 0.03 -0.01 0.09 0.13 -0.02 0.08 0.04 0.01 -0.01 -0.04 0.01 -0.02 -0.02 0.08 -0.02 0.04 0.03 0.01 0.00 0.00 0.00 0.01 ]
G [ 0.00 0.01 -0.00 0.02 0.04 -0.02 -0.02 0.06 0.04 -0.00 0.02 0.12 0.09 0.07 0.12 0.09 -0.02 0.08 0.03 -0.01 0.02 0.01 -0.00 0.02 0.01 ]
T [ 0.01 0.01 0.01 -0.00 -0.01 -0.02 -0.06 -0.02 -0.04 0.04 -0.03 -0.03 -0.05 0.01 -0.03 -0.00 -0.02 -0.04 -0.01 0.02 -0.03 0.02 0.01 -0.00 -0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 748

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 572

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 198

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages