Detailed information of deep learning profile BP000300.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in ovary using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000300.1
Cell line/tissue: ovary
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR548DDS
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.00 0.00 ]
C [ 0.00 0.00 -0.00 0.01 0.04 -0.00 0.08 0.12 0.03 0.05 0.12 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ -0.00 0.00 0.01 0.02 -0.00 0.06 -0.00 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 0.05 -0.00 0.13 0.07 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.06 -0.00 -0.00 0.02 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4278 4170 4346 5711 5157 4956 4633 4749 3750 5130 4853 3759 3871 3500 5644 6716 1952 7883 1765 990 1742 1603 282 7195 161 116 887 7230 504 2015 88 1133 3422 4444 8227 5331 6319 4944 4356 4185 5229 4799 6174 9258 6524 3758 4522 4169 5677 5751 ]
C [ 5541 5723 6098 4549 4505 5058 5717 5557 5713 3059 2848 4612 5690 8799 4552 5747 5914 2478 6520 10097 872 17053 19415 11166 12006 19807 1590 1514 6518 3612 88 1097 9289 7717 2755 5392 4078 4550 4694 4411 3487 2983 4692 4455 4995 5007 3461 7455 7457 5292 ]
G [ 5360 5256 4971 4689 4440 4812 4911 6039 3831 7078 8705 7200 5998 3691 3987 4277 5132 7090 9928 1168 14753 971 211 904 133 84 618 8341 12330 661 19723 16259 2003 4053 6791 4903 4484 5510 6069 6875 7642 9096 4957 3115 3826 4117 6935 5316 3521 5094 ]
T [ 5048 5078 4812 5278 6125 5401 4966 3882 6933 4960 3821 4656 4668 4237 6044 3487 7229 2776 2014 7972 2860 600 319 962 7927 220 17132 3142 875 13939 328 1738 5513 4013 2454 4601 5346 5223 5108 4756 3869 3349 4404 3399 4882 7345 5309 3287 3572 4090 ]

Hypothetical CWM

   
A [ -0.00 -0.00 0.01 0.02 -0.03 0.02 -0.01 -0.04 -0.02 -0.00 -0.03 0.01 -0.05 -0.03 -0.03 0.04 -0.04 -0.02 -0.06 -0.02 -0.01 -0.00 0.01 0.01 0.01 ]
C [ 0.01 0.02 -0.00 0.01 0.02 -0.01 0.03 0.08 -0.02 0.09 0.12 0.07 0.09 0.12 0.02 -0.00 0.04 0.06 -0.02 -0.02 0.04 0.02 -0.00 0.01 0.00 ]
G [ 0.01 0.00 0.00 0.00 0.01 0.03 0.04 -0.02 0.08 -0.02 -0.02 0.01 -0.04 -0.01 0.01 0.04 0.08 -0.02 0.13 0.09 -0.01 0.03 0.04 0.01 0.01 ]
T [ -0.00 -0.00 0.01 -0.02 0.02 -0.01 -0.02 0.01 -0.01 -0.03 -0.03 -0.04 0.04 -0.04 0.06 -0.01 -0.02 0.03 -0.02 -0.01 0.02 -0.01 -0.01 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 748

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 572

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 198

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages