Detailed information of deep learning profile BP000299.1

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This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000299.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR544APK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Sequence logo

 

Contribution weight matrix (CWM)

 
A [ 0.01 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 0.02 -0.00 -0.01 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 -0.00 0.01 0.05 -0.00 0.10 0.15 0.05 0.06 0.17 0.00 -0.00 0.01 0.01 -0.00 -0.00 0.02 0.01 -0.00 0.00 ]
G [ 0.00 0.00 0.01 0.03 -0.00 0.08 0.00 -0.00 0.00 0.00 -0.00 -0.00 0.02 0.06 -0.00 0.16 0.08 -0.00 0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 0.02 -0.00 0.07 -0.01 -0.00 0.03 -0.00 -0.00 0.00 -0.00 -0.00 -0.00 ]

Frequency matrix

       
A [ 4322 4243 4262 5117 4756 4531 4478 4606 4051 4876 4829 3904 4144 3577 5503 6457 2485 7621 2255 1292 1919 1652 448 6103 339 165 1454 7040 716 3052 180 1315 3507 4459 6792 4982 5602 4778 4471 4415 4861 4658 5523 7642 5786 3880 4399 4314 5263 5422 ]
C [ 5018 5092 5225 4481 4477 5074 5168 5173 5052 3429 3284 4686 5165 7750 4309 5053 5381 2431 5517 9054 1135 15198 17752 10425 11462 18408 1959 1706 6730 2762 196 1483 8036 6021 3089 4659 3911 4331 4513 4348 3629 3237 4377 4327 4586 4597 3825 6112 6193 4647 ]
G [ 4814 4801 4681 4434 4448 4407 4561 5263 4091 5791 6783 6097 4941 3568 3786 4037 4610 5971 9092 1510 12657 1328 274 937 257 89 569 7167 10188 1100 18053 14203 2311 4177 6266 5090 4554 5054 5183 5728 6425 7517 4777 3348 3943 4120 5775 4856 3661 4627 ]
T [ 4825 4843 4811 4947 5298 4967 4772 3937 5785 4883 4083 4292 4729 4084 5381 3432 6503 2956 2115 7123 3268 801 505 1514 6921 317 14997 3066 1345 12065 550 1978 5125 4322 2832 4248 4912 4816 4812 4488 4064 3567 4302 3662 4664 6382 4980 3697 3862 4283 ]

Hypothetical CWM

   
A [ -0.01 -0.01 0.01 0.02 -0.04 0.03 -0.01 -0.06 -0.02 0.01 -0.03 0.02 -0.06 -0.03 -0.03 0.06 -0.06 -0.02 -0.07 -0.03 -0.01 -0.00 0.02 0.00 0.01 0.00 -0.00 ]
C [ 0.01 0.04 -0.00 0.02 0.03 -0.01 0.04 0.11 -0.02 0.11 0.15 0.09 0.12 0.17 0.02 -0.02 0.05 0.07 -0.02 -0.02 0.05 0.04 -0.00 0.01 0.01 0.01 0.01 ]
G [ 0.02 0.00 0.00 0.01 0.02 0.03 0.06 -0.02 0.12 -0.02 -0.03 0.01 -0.04 -0.01 0.01 0.05 0.11 -0.02 0.17 0.11 -0.02 0.03 0.05 0.02 0.01 0.01 0.02 ]
T [ 0.00 -0.00 0.01 -0.02 0.03 -0.02 -0.02 0.02 -0.01 -0.05 -0.04 -0.05 0.04 -0.05 0.08 -0.02 -0.02 0.04 -0.02 -0.01 0.02 -0.01 -0.02 -0.00 0.00 0.00 0.00 ]

Other motifs identified by TF-MoDISco

 

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 859

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 794

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 698

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 552

CWM

PFM

     

HCWM

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 170

CWM

PFM

     

HCWM

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages