Detailed information of deep learning profile BP000299.1

This page shows detailed deep learning-derived predictions and motifs for CTCF in heart left ventricle using a single trained BPNet model. Please scroll down the page to browse other models for this transcription factor.

Model details

Name: CTCF
Model ID: BP000299.1
Cell line/tissue: heart left ventricle
Class: C2H2 zinc finger factors
Family: More than 3 adjacent zinc fingers
JASPAR ID: MA0139.2
Taxon: Vertebrates
Species: Homo sapiens
Data Type: ChIP-seq
Uniprot ID: P49711  
Source: ENCSR544APK
Model: BPNet
Download trained model
Download TF-MoDISco Report

Contribution weight matrix (CWM)

A [ -0.00 -0.00 -0.00 0.00 -0.00 -0.00 0.03 -0.00 -0.01 0.07 -0.00 0.02 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 0.01 -0.00 ]
C [ 0.00 0.01 0.00 -0.00 0.08 0.16 -0.00 0.06 0.02 -0.00 -0.00 0.00 0.00 -0.00 0.00 0.08 -0.00 0.03 0.01 0.00 0.00 ]
G [ 0.00 -0.00 0.01 0.02 -0.00 -0.00 0.01 0.01 -0.00 0.00 0.17 0.06 0.05 0.15 0.10 -0.00 0.05 0.01 -0.00 0.01 0.00 ]
T [ -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.01 -0.00 0.02 -0.00 -0.00 -0.00 0.01 -0.00 -0.00 -0.00 -0.00 -0.00 0.01 -0.00 0.01 ]

Frequency matrix

A [ 4283 3862 3697 4980 6382 4664 3662 4302 3567 4064 4488 4812 4816 4912 4248 2832 4322 5125 1978 550 12065 1345 3066 14997 317 6921 1514 505 801 3268 7123 2115 2956 6503 3432 5381 4084 4729 4292 4083 4883 5785 3937 4772 4967 5298 4947 4811 4843 4825 ]
C [ 4627 3661 4856 5775 4120 3943 3348 4777 7517 6425 5728 5183 5054 4554 5090 6266 4177 2311 14203 18053 1100 10188 7167 569 89 257 937 274 1328 12657 1510 9092 5971 4610 4037 3786 3568 4941 6097 6783 5791 4091 5263 4561 4407 4448 4434 4681 4801 4814 ]
G [ 4647 6193 6112 3825 4597 4586 4327 4377 3237 3629 4348 4513 4331 3911 4659 3089 6021 8036 1483 196 2762 6730 1706 1959 18408 11462 10425 17752 15198 1135 9054 5517 2431 5381 5053 4309 7750 5165 4686 3284 3429 5052 5173 5168 5074 4477 4481 5225 5092 5018 ]
T [ 5422 5263 4314 4399 3880 5786 7642 5523 4658 4861 4415 4471 4778 5602 4982 6792 4459 3507 1315 180 3052 716 7040 1454 165 339 6103 448 1652 1919 1292 2255 7621 2485 6457 5503 3577 4144 3904 4829 4876 4051 4606 4478 4531 4756 5117 4262 4243 4322 ]

Hypothetical CWM

A [ 0.00 0.00 0.00 -0.00 -0.02 -0.01 0.02 -0.01 -0.02 0.04 -0.02 -0.02 0.08 -0.05 0.04 -0.05 -0.04 -0.05 -0.01 0.02 -0.02 -0.02 0.03 -0.02 0.01 -0.00 0.00 ]
C [ 0.02 0.01 0.01 0.02 0.05 0.03 -0.02 0.11 0.17 -0.02 0.11 0.05 0.01 -0.01 -0.04 0.01 -0.03 -0.02 0.12 -0.02 0.06 0.03 0.02 0.01 0.00 0.00 0.02 ]
G [ 0.01 0.01 0.01 0.01 -0.00 0.04 0.05 -0.02 -0.02 0.07 0.05 -0.02 0.02 0.17 0.12 0.09 0.15 0.11 -0.02 0.11 0.04 -0.01 0.03 0.02 -0.00 0.04 0.01 ]
T [ -0.00 0.00 0.01 0.00 0.02 -0.00 -0.01 -0.03 -0.07 -0.02 -0.06 0.06 -0.03 -0.03 -0.06 0.02 -0.03 0.01 -0.02 -0.06 -0.01 0.03 -0.04 0.02 0.01 -0.01 -0.01 ]

Other motifs identified by TF-MoDISco

Motif name: counts.pos_patterns.pattern_1

Num. of seqlets: 859

Motif name: counts.pos_patterns.pattern_2

Num. of seqlets: 794

Motif name: counts.pos_patterns.pattern_3

Num. of seqlets: 698

Motif name: counts.pos_patterns.pattern_4

Num. of seqlets: 552

Motif name: counts.pos_patterns.pattern_7

Num. of seqlets: 170

447 profiles found for the same TF (CTCF) in other cell types/tissues

Display profiles


Model ID Name Data Source Cell line/tissue Species JASPAR ID Sequence logo
BP000001.1 CTCF ENCSR000AHD MCF-7 Homo sapiens MA0139.2
BP000002.1 CTCF ENCSR000AKB GM12878 Homo sapiens MA0139.2
BP000003.1 CTCF ENCSR000AKO K562 Homo sapiens MA0139.2
BP000004.1 CTCF ENCSR000ALA endothelial cell of umbilical vein Homo sapiens MA0139.2
BP000005.1 CTCF ENCSR000ALJ keratinocyte Homo sapiens MA0139.2
BP000006.1 CTCF ENCSR000ALV mammary epithelial cell Homo sapiens MA0139.2
BP000007.1 CTCF ENCSR000AMA HepG2 Homo sapiens MA0139.2
BP000008.1 CTCF ENCSR000AMF H1 Homo sapiens MA0139.2
BP000009.1 CTCF ENCSR000ANE skeletal muscle myoblast Homo sapiens MA0139.2
BP000010.1 CTCF ENCSR000ANO fibroblast of lung Homo sapiens MA0139.2
Showing 10 profiles of page 1 from 45 pages